| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | BCZK0048 |
|---|
| Symbol | mfd |
|---|
| ID | 3022638 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Bacillus cereus E33L |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_006274 |
|---|
| Strand | + |
|---|
| Start bp | 54530 |
|---|
| End bp | 58060 |
|---|
| Gene Length | 3531 bp |
|---|
| Protein Length | 1176 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 36% |
|---|
| IMG OID | 637544208 |
|---|
| Product | transcription-repair coupling factor |
|---|
| Protein accession | YP_081665 |
|---|
| Protein GI | 52145163 |
|---|
| COG category | [K] Transcription
[L] Replication, recombination and repair |
|---|
| COG ID | [COG1197] Transcription-repair coupling factor (superfamily II helicase) |
|---|
| TIGRFAM ID | [TIGR00580] transcription-repair coupling factor (mfd) |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 5 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGATAGGTT TATTAGAGCA ATTTTATAAA AATGAAGAGA TCCAATCGGT CATTAATGGA
TTAGAAGATG GTTTAAAAGA GCAACTTGTA TCAGGTATGG CAACCTCTTC TCGTTCGTTA
TTAATGGCGG CCTTATATAA AAAAACAAAA AAATCACAAC TTATTGTGAC GCATAATTTA
TATCAAGCAC AAAAAGTACA TGAAGATTTA GTGGCGTTAC TTGGTGAAAA AGATGTATGG
CTATATCCAG TAAATGAATT GATAGCATCA GAACTTGGTG TTGCAAGCCC AGAATTGAAG
GCACAACGTA TTGAAGTGTT AAATCGCTTA GCTGCAGGAG AGCACGGGAT TATTGTAGCA
CCAGTTGCAG GACTACGCAG ATTTTTACCA ATGAAAGAGT TGTGGAAGCA AAGGCAAATC
GAAATCAATC TAGGGCAAGA GATTGATTTA GATACATTCT TGCATACTTT ACATCATATC
GGCTATGAGC GTAAGTCTAT GGTAGAAGCT CCTGGAGAAT TTAGTTTACG CGGGGGAATA
TTAGATATTT ATCCACTAAC TGAAGAGCTA CCATTTCGTA TTGAATTTTT CGATACAGAA
GTTGATTCTA TTCGATTATT TGATGTTGAT GAACAGCGCT CTCAAGATAA AAAAGAAAGT
GTTAGATTTG GTCCAGCAAC AGAGTTTTTA TTTTCGCAGG AAGAATTGAA ATCGGGAATT
AAGCATCTTG AAGAAGGTCT GACTAAGACG ATGCAAAAAC TTTCCGATGA TAAGTTGAAG
ACTACAGTGC TTGAGACGGT AAGTCATGAA ATTGAGATGT TAAAAAACGG GCAAAGTATA
GAACAGATGT TTAAATATTT ATCTATTTTC TATAACGAAC CTGCTAGTCT GATAGATTAT
TTACCAGAAG ATGGTGTTGT GATTTTAGAT GAGATTTCCC GTATTCAAGA AACAGCATCT
CATCTTGAAA CAGAAGAGGC GGAATGGTAT ATATCCCTTC TTAGTGAGGG AACAATTATT
CAAGATTTAT CTTTCTCTCA TTCGTTTGAA GAATTTCTTC ATCATAAAAA AAGAAGTTTT
GTATATTTAA CGTTATTCTT ACGTCATATA GCGCATACAC ATCCGCAAAA CATTGTGAAC
GTGACATGTA AAACAATGCA AGATTTCCAT GGGCAGATGC AGTTGTTGAA AACTGAAATT
GATAGATGGA ACGAAGGGCA TTTTACGACC GTTGTGCTAG GTACAGATGA TGAGCGTGTG
AAAAAACTAC AACATATCTT AAGTGATTAT GATATTGATG CAGATATTGT AGAGGGCACA
GATATATTAT TGCCTGGAAG GTTACAAATT GCTGTAGGTG ATTTACATGC AGGATTTGAA
ATGCCAATGC AAAAGCTTGT TGTCATTACT GAAAAAGAGC TTTTTCATAA GAAAGTTAAA
AAATCACAAC GTAAGCAAAA GTTATCGAAT GCTGAACGCA TTAAAAGTTA TTCGGAATTA
AAAGTTGGGG ATTATGTAGT TCATGTAAAT CATGGTATAG GTAAATTCTT AGGTATTGAG
ACATTAGAGA TTAACGGTGT TCATAAAGAT TATTTGAATA TTAAATATCA AGGTAATGAT
AAGTTATACG TTCCAATTGA ACAAATTGAC CAAGTGCAAA AATATGTAGG ATCTGAAGGT
AAGGATCCGA AAGTTTATAA ATTGGGCGGA AACGATTGGA AAAAGGTCAA AACAAAAGTC
GAAAAATCTG TACAAGACAT TGCGGATGAC CTCATTAAAC TCTATGCTGA GCGCGAAGCT
TCAAAGGGTT ATGCATATAC ACCAGATACA GCAGAACAAC AAGAATTTGA GTCGTCTTTC
CCGTATCAAG AGACAGAGGA TCAATTGCGT TCTATTGAAG AGATTAAAAA GGATATGGAA
CGCGGACGTC CAATGGATAG GCTTCTTTGT GGTGATGTAG GATATGGAAA GACGGAAGTA
GCTATTCGTG CGGCGTTTAA AGCAATTATG GATGAAAAAC AAGTTGCAAT TTTAGTGCCG
ACAACGATCC TTGCACAACA ACACTATGAA ACAATTCGAG AGCGTTTTCA AGATTATCCA
ATCAATATAG GGTTATTAAG TAGATTCCGT ACGAGAAAGC AGCAAAATGA AACCATTAAA
GGTTTAAAAG ATGGCACGGT AGATATTGTA ATCGGAACGC ATCGTATTTT ATCTAAAGAT
GTTACTTATA AAGATTTAGG TCTTCTCATT ATTGATGAAG AACAAAGATT TGGCGTAACA
CATAAAGAAA AAATTAAACA ATTAAAAGCA AATGTTGACG TATTAACATT AACGGCAACT
CCGATTCCAC GTACGCTTCA TATGTCTATG CTTGGTGTGC GTGATTTATC TGTTATTGAG
ACGCCGCCGG AAAATCGTTT CCCAGTTCAA ACATATGTAG TAGAGTATAA TCCAGCGTTA
ATGCGAGAAG CGATAGAACG CGAGCTTGCA AGAGGTGGGC AAGTTTACTT CCTATATAAT
CGTGTGGAGG ATATTGAACG AAAAGCAGAT GAAATTTCGA TGTTGGTTCC AGATGCGCGT
GTAACTTATG CGCACGGTAA AATGAACGAG AGTGAATTAG AGTCTGTTAT GCTATCGTTT
TTAGAAGGGC AGCATGATGT TCTTGTAAGT ACAACGATTA TTGAGACGGG TGTAGATATT
CCAAATGTAA ATACATTAAT TGTATTTGAT GCAGATCGTA TGGGATTATC GCAGTTGTAT
CAGCTTCGTG GGCGTGTTGG ACGTTCTAAT CGTGTTGCAT ATGCTTACTT TGCATACAAA
CGAGATAAAG TGTTATCAGA AGTTGCGGAG AAGCGTCTGC AAGCCATTAA GGAGTTCACA
GAGCTTGGGT CTGGTTTCAA AATTGCGATG CGAGATTTAT CAATTCGTGG TGCAGGTAAC
TTGTTAGGAG CTGAACAACA TGGATTTATT GATTCTGTCG GATTTGATTT ATATTCTCAA
ATGTTAAAAG ACGCAATTGA ACAGCGTAGA GGAACAGACG GAGTTGAAAA TACGGTTAAT
GTTGAAATTG ATTTAGAAGT AGATGCATAT TTACCAGATG CTTATATTTC GGATAGTAAA
CAAAAAATTA TGATGTATAA ACAATTTAGA GGTGTTTCTG CGATTGAAGA TATTGAAGAG
TTGCAGGAAG AGATGATAGA TAGATTTGGT GATTATCCGC AAGAAGTTGG TTACTTATTG
CAAATTGCAA ATATTAAAGT ATTGGCAATG AAAGAACAAA TCGAATTAAT TAAGCAAAAT
AAATTTGAAG TAACAATTCT GTTCTCAGAA CAAGCGAGTC AAAATATTGA TGGCGGAAAA
TTATTCATGC TCGGAAATAG TTTTGGGCGA ATGATCGGTC TAGGAATGGA AGGATCACAA
TTGAAAATCG TCATGAAAAC AAATGGATTA GAGACATCGA AGTGGTTAAC AATTGCTGAA
AATTTATTAA AAGGCTTGCC AGATGTAAAA AAAGAAGTCA TAAATGCCTA A
|
|---|
| Protein sequence | MIGLLEQFYK NEEIQSVING LEDGLKEQLV SGMATSSRSL LMAALYKKTK KSQLIVTHNL
YQAQKVHEDL VALLGEKDVW LYPVNELIAS ELGVASPELK AQRIEVLNRL AAGEHGIIVA
PVAGLRRFLP MKELWKQRQI EINLGQEIDL DTFLHTLHHI GYERKSMVEA PGEFSLRGGI
LDIYPLTEEL PFRIEFFDTE VDSIRLFDVD EQRSQDKKES VRFGPATEFL FSQEELKSGI
KHLEEGLTKT MQKLSDDKLK TTVLETVSHE IEMLKNGQSI EQMFKYLSIF YNEPASLIDY
LPEDGVVILD EISRIQETAS HLETEEAEWY ISLLSEGTII QDLSFSHSFE EFLHHKKRSF
VYLTLFLRHI AHTHPQNIVN VTCKTMQDFH GQMQLLKTEI DRWNEGHFTT VVLGTDDERV
KKLQHILSDY DIDADIVEGT DILLPGRLQI AVGDLHAGFE MPMQKLVVIT EKELFHKKVK
KSQRKQKLSN AERIKSYSEL KVGDYVVHVN HGIGKFLGIE TLEINGVHKD YLNIKYQGND
KLYVPIEQID QVQKYVGSEG KDPKVYKLGG NDWKKVKTKV EKSVQDIADD LIKLYAEREA
SKGYAYTPDT AEQQEFESSF PYQETEDQLR SIEEIKKDME RGRPMDRLLC GDVGYGKTEV
AIRAAFKAIM DEKQVAILVP TTILAQQHYE TIRERFQDYP INIGLLSRFR TRKQQNETIK
GLKDGTVDIV IGTHRILSKD VTYKDLGLLI IDEEQRFGVT HKEKIKQLKA NVDVLTLTAT
PIPRTLHMSM LGVRDLSVIE TPPENRFPVQ TYVVEYNPAL MREAIERELA RGGQVYFLYN
RVEDIERKAD EISMLVPDAR VTYAHGKMNE SELESVMLSF LEGQHDVLVS TTIIETGVDI
PNVNTLIVFD ADRMGLSQLY QLRGRVGRSN RVAYAYFAYK RDKVLSEVAE KRLQAIKEFT
ELGSGFKIAM RDLSIRGAGN LLGAEQHGFI DSVGFDLYSQ MLKDAIEQRR GTDGVENTVN
VEIDLEVDAY LPDAYISDSK QKIMMYKQFR GVSAIEDIEE LQEEMIDRFG DYPQEVGYLL
QIANIKVLAM KEQIELIKQN KFEVTILFSE QASQNIDGGK LFMLGNSFGR MIGLGMEGSQ
LKIVMKTNGL ETSKWLTIAE NLLKGLPDVK KEVINA
|
|---|
| |