| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | BCG9842_B1479 |
|---|
| Symbol | gabP |
|---|
| ID | 7186126 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Bacillus cereus G9842 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011772 |
|---|
| Strand | - |
|---|
| Start bp | 3653191 |
|---|
| End bp | 3654540 |
|---|
| Gene Length | 1350 bp |
|---|
| Protein Length | 449 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 36% |
|---|
| IMG OID | 643551562 |
|---|
| Product | GABA permease |
|---|
| Protein accession | YP_002447232 |
|---|
| Protein GI | 218898821 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG1113] Gamma-aminobutyrate permease and related permeases |
|---|
| TIGRFAM ID | [TIGR01773] gamma-aminobutyrate permease |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 12 |
|---|
| Plasmid unclonability p-value | 0.10983 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 34 |
|---|
| Fosmid unclonability p-value | 0.00182133 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | ATGATCTCAA TTGGTGGCGT AATAGGAGCT GGTTTGTTTG TTGGAAGTGG TGCGGTTGTG
CATTCGGCAG GACCTGGTTC TATCGTTTCA TATGCATTAG CAGGGCTTCT AGTTATTTTC
GTTATGAGAA TGCTGGGGGA AATGGCAGCT ATTAATCCGA CAAGTGGTTC ATTTGCAACA
TATGCAAGAG AAGCAATTGG TCCATGGGCA GGTTATACAA TTGGGTGGCT ATATTGGTTT
TTCTGGGTAA TTGTTATTGC AATAGAAGCT ACAGCAGGTG CTGGTATTAT TCAATACTGG
ATTCCGGAAA TCCCACTCTG GTTATTAAGC TTAATATTAA CGATTTTATT AACGTTGACG
AATGTTTTCT CGGTGAAATC ATTTGGAGAA TTTGAATATT GGTTTTCATT TATTAAAGTA
ATAAGTATTG TTTTGTTCCT TTGCTTAGGT CTTGCTGTTA TTTTAGGATT TGTACCAGGA
ACGGAAGCAC CTGGCACTTC GAATTTAGTA GGGCAAGGAG GATTTATGCC AAATGGTATA
AGTTCGGTGT TACTTGGAAT TACCGTCGTT ATATTTTCAT TTATGGGATC AGAGATTGTT
GCTGTAGCCG CTGGAGAGTC TGCCGAACCT GTAAAAGCAG TAAAAACAGC AACAAATAGT
GTGATTTGGC GTATTCTCGT ATTTTTCATT GGATCGATCG CTGTAGTTGT TACACTCCTT
CCGTGGAATT CAGCGAACAT ACTAAAAAGC CCATTTGTGG CGGTATTGGA ACATATAGGG
ATACCAGCGG CAGCACAAAT TATGAATTTT ATCGTTTTAA CAGCTGTACT TTCTTGTTTA
AATTCGGGTT TATATACGAA CTCAAGAATG CTTTTTTCAA TGGCAGAAAG AGGAGATGCA
CCAAAGGCAT TTTTGAAATT GAATAGTAGT GGTGTTCCGG TTCGGGCGGT TTTATTTGGA
ACTTTCTTTG CTTACATTGG AGTTGTTTTT AGTTACATAT CTCCAGATAA AGTATTTTTA
TTTTTAGTGA ATGCATCTGG CGGTATTGCA TTACTCGTTT ATCTCGTTAT AGCAATTTCA
CATTTCAAGA TACGTAAAAA AATGGGGAAA GCAGAACAAC AAAATTTGAA AGTGAAGATG
TGGCTTTTTC CATATGTAAC ATATGTTACA ATTGCTGCGA TTATAGCAGT TTTAGTTGCA
ATGATCGCAA TTGAATCTTT ACGTTCACAG GCACTATTAA CGATACTTGT TACTCTTCTT
ATAATAATTT CTTATTTTAT TTTTAATAGA AATAAAAATA GTACAGTATT GAATTCCGAA
AGTAAAAATG AGGAATCTGT TCGATTCTAA
|
|---|
| Protein sequence | MISIGGVIGA GLFVGSGAVV HSAGPGSIVS YALAGLLVIF VMRMLGEMAA INPTSGSFAT
YAREAIGPWA GYTIGWLYWF FWVIVIAIEA TAGAGIIQYW IPEIPLWLLS LILTILLTLT
NVFSVKSFGE FEYWFSFIKV ISIVLFLCLG LAVILGFVPG TEAPGTSNLV GQGGFMPNGI
SSVLLGITVV IFSFMGSEIV AVAAGESAEP VKAVKTATNS VIWRILVFFI GSIAVVVTLL
PWNSANILKS PFVAVLEHIG IPAAAQIMNF IVLTAVLSCL NSGLYTNSRM LFSMAERGDA
PKAFLKLNSS GVPVRAVLFG TFFAYIGVVF SYISPDKVFL FLVNASGGIA LLVYLVIAIS
HFKIRKKMGK AEQQNLKVKM WLFPYVTYVT IAAIIAVLVA MIAIESLRSQ ALLTILVTLL
IIISYFIFNR NKNSTVLNSE SKNEESVRF
|
|---|
| |