| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | BBta_6863 |
|---|
| Symbol | |
|---|
| ID | 5151544 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Bradyrhizobium sp. BTAi1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009485 |
|---|
| Strand | + |
|---|
| Start bp | 7185738 |
|---|
| End bp | 7187231 |
|---|
| Gene Length | 1494 bp |
|---|
| Protein Length | 497 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 66% |
|---|
| IMG OID | 640561545 |
|---|
| Product | two component, sigma54 specific, Fis family transcriptional regulator |
|---|
| Protein accession | YP_001242656 |
|---|
| Protein GI | 148258071 |
|---|
| COG category | [T] Signal transduction mechanisms |
|---|
| COG ID | [COG2204] Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 8 |
|---|
| Plasmid unclonability p-value | 0.339055 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 25 |
|---|
| Fosmid unclonability p-value | 0.119022 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGCTGCCA GCATTTTGAT CGCCGATGAT GATCCGGTCC AGCGCCGGCT GGTGGAGAAC
ATGGTGCAGA AATGCGGCTA CGAGGCGATT GTGGTCGACA CCGGCGACGC CGTCATCGAG
AAGCTGACCC ATACCGACGC CGGCCCGATC GACGCCATCG TGCTCGATCT GGTGATGCCC
GGGCTCGACG GCATGGGCGT CCTGTCCAAG ATGCGCGAAG CCGGGATTTC GATACCCGTG
ATCGTGCAGA CGGCGCATGG CGGGATCGAC AATGTCGTTT CGGCGATGCG CGCCGGCGCG
CAGGACTTCG TGGTCAAGCC GGTCGGGATC GAGCGTCTGC AGGTCTCCTT GCGCAATGCC
CTGAACACGT CCGCGCTGAA GGGAGAGCTG CAGCGCATCC GTCACAGCCG TGAGGGCCGG
CTGACGTTCG ACGACATCAT TACCCGGGCG GAGGCGATGG CGCCGATCCT GCGCATCGCC
GAGAAGGCTG CGGCATCCTC GATCCCAGTC TTGATCGAAG GCGAATCCGG AGTCGGCAAG
GAGCTGTTCG CCCGCGCGAT CCACGGCACC AGCGAGCGCA AGACAAAGCC GTTTGTGGCG
GTCAATTGCG GCGCGATCCC CGACAACCTC GTGGAATCGA TTCTGTTCGG CCATGAGAAG
GGCGCATTTA CTGGCGCGAC CGAGCGTCAC ATGGGCAAAT TCGTCGAAGC CCATGGCGGA
ACGCTGTTCC TCGACGAGGT CTCCGAGCTG CCGCTCGCCG CCCAGGTCAA GCTGCTGCGC
GCTTTGCAGG AAGGCGCGGT CGAGGCGGTC GGCGGCCGCA AGCCGGTCAA GGTCGATGTC
CGCATCATCT CGGCGACCAA TCGCAGGCTG CTCGAACGCG TCAAGGAAGG TCATTTCCGC
GAAGACCTGT TCTACCGGCT GCATGTGCTG CCGCTGACGA TCCCGCCCTT GCGCGCGCGC
CGCGAGGACA TTCCGCATCT GCTGCGGCAC TTCCTCGCGC GTTTCGCGGC CGAGGAGAAT
CGCGCCGTGA CCGGCATCGC CGGCGACGCC GTCGCCTATC TGACCAAGCT CGACTGGCCC
GGCAACATCC GCCAGCTTGA AAACGCGGTC TATCGCGCCG TCGTCATGAG CGAGAGCGAT
CTGCTCGGCG TGGCGGATTT TCCGCTGATC CCGACCCATG CACCGCCGGT GGAGCCGGCG
CCCGCGCTCA CCGTCGAGCG GCCCATCCCG TCACTGCCGG CGGTCGTGCC GGGTAGTGAA
GTACCCATCG CTCCCCTGCC CTCGCACGGT GCTCTGCCGC TCCTGACCGC GAGCGGCGAG
GTGCGCCCAC TCGAGGAACT GGAGCACGAG ATCATCCGCT TCGCCATCGC GCATTACCGT
GGCCAGATGT CGGAGGTTGC GCGGCGTCTC AAAATCGGAC GCTCGACGCT ATACCGCAAG
CTCGACGAAG CCAATGGCGA GACGCCGGCG ACGGAATCTC CGCCGCTGGG ATGA
|
|---|
| Protein sequence | MAASILIADD DPVQRRLVEN MVQKCGYEAI VVDTGDAVIE KLTHTDAGPI DAIVLDLVMP
GLDGMGVLSK MREAGISIPV IVQTAHGGID NVVSAMRAGA QDFVVKPVGI ERLQVSLRNA
LNTSALKGEL QRIRHSREGR LTFDDIITRA EAMAPILRIA EKAAASSIPV LIEGESGVGK
ELFARAIHGT SERKTKPFVA VNCGAIPDNL VESILFGHEK GAFTGATERH MGKFVEAHGG
TLFLDEVSEL PLAAQVKLLR ALQEGAVEAV GGRKPVKVDV RIISATNRRL LERVKEGHFR
EDLFYRLHVL PLTIPPLRAR REDIPHLLRH FLARFAAEEN RAVTGIAGDA VAYLTKLDWP
GNIRQLENAV YRAVVMSESD LLGVADFPLI PTHAPPVEPA PALTVERPIP SLPAVVPGSE
VPIAPLPSHG ALPLLTASGE VRPLEELEHE IIRFAIAHYR GQMSEVARRL KIGRSTLYRK
LDEANGETPA TESPPLG
|
|---|
| |