| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | BBta_4734 |
|---|
| Symbol | rnr |
|---|
| ID | 5153125 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Bradyrhizobium sp. BTAi1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009485 |
|---|
| Strand | + |
|---|
| Start bp | 4962597 |
|---|
| End bp | 4964975 |
|---|
| Gene Length | 2379 bp |
|---|
| Protein Length | 792 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 67% |
|---|
| IMG OID | 640559535 |
|---|
| Product | ribonuclease R |
|---|
| Protein accession | YP_001240666 |
|---|
| Protein GI | 148256081 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG0557] Exoribonuclease R |
|---|
| TIGRFAM ID | [TIGR00358] VacB and RNase II family 3'-5' exoribonucleases
[TIGR02063] ribonuclease R |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 7 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 32 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGATCAAAA AGAGCGACAT CGGCCTCCCT CCGCGGGAGG CCATCGTCGC CTTCATCCGC
GCCAATCCGG GCAAGGTTGG CACCAAGGAC ATCGCCCGCG CGTTCGGCCT GAAGAACGCC
GATCGCGCCG CGCTCAAGCA GTTGCTGCGC GAACTCGTCG CCGACGGCAC CGTCAAGAAG
AGCGGCCGCA AGAAGATCGT CGAGCCTGCG ACCTTGCCGG CGACGCTGGT GGCGGACATT
ACCGGCCGCG ACAGCGATGG CGAGCTGATC GCCAAGCCCG CCGAATGGGA CGAGGCGGAG
CAATCCGAGC CGCCGCGCAT CCGCATCCAC ACGCCGCGCC ATGCGCGGCC CGGCGCGACG
GCCGGTGTCG GCGACCGCGC GCTTGTTCGC GTGGAGCCGA TCAACGACGC CGAGGGCATC
GCCTATCGCG GCCGCGTGCT GAAGGTGCTC GATCAGGCGC GCAACCGCGT GCTCGGCATC
TTCAAAAGCA ATCCAGGCGG CGGTGGCCGC CTGATCCCGG TCGACAAGAA GCAGGCGGGA
CGCGAGCTCT CGATCGCCCC CGATGACACC AAGGACGCCA AGGACGGCGA CCTCATCAGC
GTCGACCTGC TGCGCGGGCG CGGCTATGGC CTGCCCGCAG GTCGGGTGAA GGAGCGCTTC
GGCTCGGTCG CGACCGAGAA GGCGATCAGC CTGATCGCGA TCCATGCCCA CGAGATCCCG
ATGGACTTCT CGGCCGCGGC GATCGCCGAG GCCGAGGCCG CGCAGCCCGC GACCCTGAAG
GGCCGTGAGG ACTGGCGCGA GCTGCCGCTC ATCACCATCG ATCCGCGCGA CGCCAAGGAT
CACGACGACG CGGTTCATGC CGAGCCGGAT GCCGATCCGA GCAATGCCGG CGGCGTCATC
GTCCATGTCG CGATCGCCGA CGTCGCCTAC TATGTGCGGC CGGGCTCGGC GCTCGATCGC
GACGCGCTGA TCCGCGGCAA TTCGGTGTAC TTCCCCGACC GCGTCGTGCC GATGCTGCCG
GAACGCATCT CCAACAATCT GTGCTCGCTG GTGCCGGGCG AGCCGCGCGG CGCGCTCGCC
GTGCGCATGG TGATCGGTGC CGACGGCCGC AAGCGCTCGC ACTCGTTCCA CCGCGTGCTG
ATGCGCTCGG CGGCAAGACT GTCCTACGCG CAAGCCCAGG CCGCGATCGA CGGCAAGCCG
GACGACATCA CCGGTCCCCT GCTCGAGCCG ATCCTGAAGC CGCTCTACGC GGCCTACGAG
GTCGCCAAGC GCGGCCGCGA CGCGCGCGAT CCGCTCGACC TCGACATTCC CGAGCGCAAG
ATCCTGCTCA AGAAGGACGG CACGGTCGAC CGCGTCGTCG TGCCCGAGCG GCTGGACGCC
CACAGACTGA TCGAGGAGTT CATGATCTCG GCCAACGTGG CCGCGGCCGA ACTGCTGGAG
AAGAAGGCGC TCCCCTTGAT CTACCGCGTG CACGACGAGC CGACGGTGGA GAAGATCCAT
GCGCTGCAGG AATTTCTCAA GACGCTCGAC GTACCCTTCG CCAAGAGCGG AGCGCTCAGG
CCGTCGCTGT TCAACCGCGT GCTGACGCTC GTCGCGGGCC AGGACTATGA ACATCTCGTC
AACGAGGTCG TGCTGCGCTC GCAGGCGCAA GCGGAATACT CCACGGACAA TTACGGGCAT
TTCGGCCTCA ATCTGCGCCG CTACGCCCAT TTCACCTCGC CGATCCGCCG CTATGCCGAC
CTCGTCGTGC ATCGCGGCCT GTTGCGCGCG CTGAATCTCG GCGACGGCGC CCTGCCCGAC
AGCGAGACGC CGGATCATCT CGCCGAGGTT GCGGCGCAGA TCTCGGTCAC CGAGCGGCGC
GCGATGAAGG CAGAGCGCGA GACCGCCGAC CGCCTGATCG CGCATCACCT CGCGGACCGC
GTCGGCGCCA CCTTCCAGGG CCGCATCTCC GGCGTCACCC GCGCCGGTCT CTTCATCAAG
CTCGACGACA CCGGCGCCGA CGGCCTGGTT CCGATCCGCA CCCTCGGCAC GGAATATTTC
GACTATGACG AAACCCGGCA TGCGCTGATC GGCCAGCGCA GCGGTGCCAT GCATCGGCTG
GGTGACGTCG TCGACGTGCG TCTGGTAGAA GCTCAACCGG TGGCCGGCGC GCTGCGCTTC
GAATTGCTGA CACAGGCCGA TGTCCTGGTG TCGCGGCATC CGCGTGGCGC AGGCCCCAGG
CGCAAGAGTA CCGCCAAGAG GAATACCAAG ACGAAAGCCA AGGCGACCCA AGCCGACGCT
CGTCCGCGGC ACAAGGAAAA AAGCCGCAAG AAAAACCAAA AGGCAGGCGC AAAACGCAAG
CCCGGCACAT CGAAGAAAGG CAGATCATGG ACGCCATGA
|
|---|
| Protein sequence | MIKKSDIGLP PREAIVAFIR ANPGKVGTKD IARAFGLKNA DRAALKQLLR ELVADGTVKK
SGRKKIVEPA TLPATLVADI TGRDSDGELI AKPAEWDEAE QSEPPRIRIH TPRHARPGAT
AGVGDRALVR VEPINDAEGI AYRGRVLKVL DQARNRVLGI FKSNPGGGGR LIPVDKKQAG
RELSIAPDDT KDAKDGDLIS VDLLRGRGYG LPAGRVKERF GSVATEKAIS LIAIHAHEIP
MDFSAAAIAE AEAAQPATLK GREDWRELPL ITIDPRDAKD HDDAVHAEPD ADPSNAGGVI
VHVAIADVAY YVRPGSALDR DALIRGNSVY FPDRVVPMLP ERISNNLCSL VPGEPRGALA
VRMVIGADGR KRSHSFHRVL MRSAARLSYA QAQAAIDGKP DDITGPLLEP ILKPLYAAYE
VAKRGRDARD PLDLDIPERK ILLKKDGTVD RVVVPERLDA HRLIEEFMIS ANVAAAELLE
KKALPLIYRV HDEPTVEKIH ALQEFLKTLD VPFAKSGALR PSLFNRVLTL VAGQDYEHLV
NEVVLRSQAQ AEYSTDNYGH FGLNLRRYAH FTSPIRRYAD LVVHRGLLRA LNLGDGALPD
SETPDHLAEV AAQISVTERR AMKAERETAD RLIAHHLADR VGATFQGRIS GVTRAGLFIK
LDDTGADGLV PIRTLGTEYF DYDETRHALI GQRSGAMHRL GDVVDVRLVE AQPVAGALRF
ELLTQADVLV SRHPRGAGPR RKSTAKRNTK TKAKATQADA RPRHKEKSRK KNQKAGAKRK
PGTSKKGRSW TP
|
|---|
| |