| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | BBta_4504 |
|---|
| Symbol | lpxB |
|---|
| ID | 5154731 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Bradyrhizobium sp. BTAi1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009485 |
|---|
| Strand | - |
|---|
| Start bp | 4717415 |
|---|
| End bp | 4718608 |
|---|
| Gene Length | 1194 bp |
|---|
| Protein Length | 397 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 69% |
|---|
| IMG OID | 640559305 |
|---|
| Product | lipid-A-disaccharide synthase |
|---|
| Protein accession | YP_001240442 |
|---|
| Protein GI | 148255857 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG0763] Lipid A disaccharide synthetase |
|---|
| TIGRFAM ID | [TIGR00215] lipid-A-disaccharide synthase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 7 |
|---|
| Plasmid unclonability p-value | 0.109704 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 33 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | GTGACGGCGC TCCCCGCGGC AGGCCCGGCC ATCCGCAGGA TCTGTCTGGT CGCGACCGAG
GAGTCGGGGG ACCGTCTCGG CGCCAGCCTG ATGAAGGTGC TGCGCCAACG TCTCGGGGAT
GGCGTCGCGT TTTCCGGCGT CGGCGGCCGC GGCATGATCG GCGAGGGTCT CGTCTCGCTG
TTTCCGATCG AGGAGCTGTC GATCGTCGGT TTCACCGCCG TGCTGAAGCA GCTGCCCAAG
ATCTTGCGCC TGATCCGCGG CACGGTGGAT GCGATCGTCG CGTCGCAGCC GGACGTGCTC
GTCATCATCG ACAGTCCCGA TTTCACCCAG CGCGTGGCGA AGCGGGTTCG CGCGCGCGAT
GGCGCGATCC CGATCGTCAA CTACGTGGCG CCGACCGTGT GGGCGTGGCG GCCGGGCCGG
GCACGGACGA TGCGTGGCTA TGTCGATCAT GTCCTCGGCC TGCTGCCGTT CGAGCCCGAC
GCATTCCGCC GGCTCGATGG TCCGCCCTGC ACCTATGTCG GCCATCCCCT GATCGAGCAG
CTTGCGAGCC TGCGTCCCAC CCCGGAGGAG CAGGCGCGCC GCGAGGCCGC GCCGCCACGG
TTGCTGGTAC TGCCCGGCAG CCGCCGCAGC GAGGTCGGGC GGCATATGCC GGTGTTCGGC
GAGACCCTGG CCCGGCTGCA GGCCCAAGGC ATCGCGTTCG AAGCGGTGCT GCCGACGACA
CCGCATCTCG AAGCCGCTGT CAAAGCAGGG GTGGCCAATT GGCCGGTGCA GCCGACCATC
ATCATGGGCG AGGCCGAGAA GCGCTCCGCC TTCCGCAGCG CGCGCGCGGC GCTCGCCAAA
TCCGGTACGG TGACCCTCGA ACTCGCGCTG GCCGGCGTGC CGATGGTCAC GGCCTATCGC
GTCGGCCAAG TCGAAGCCTT CATCCTGCGG CGTCTCGTCA AGGTGCCATC GGTGATCCTC
GCCAATCTCG TGATCGGCGA GGCCGTCATT CCGGAGTTCC TGCAGGAAGA CTGCACGGCG
GACAATCTTG CGCCGGTGCT GGTCGATCTG TTGAAAGACG GGCCCGTCCG CGCCCGCCAA
GTTGCCGCGT TCAGTCGCCT CGACAGCATC ATGGCGACAG GCGCGGCCTC GCCGAGCGAG
CGTGCCGCCG ACATCGTGCT GGCGACGATG CGCCGCGAAC GAGCGCCGGG CTGA
|
|---|
| Protein sequence | MTALPAAGPA IRRICLVATE ESGDRLGASL MKVLRQRLGD GVAFSGVGGR GMIGEGLVSL
FPIEELSIVG FTAVLKQLPK ILRLIRGTVD AIVASQPDVL VIIDSPDFTQ RVAKRVRARD
GAIPIVNYVA PTVWAWRPGR ARTMRGYVDH VLGLLPFEPD AFRRLDGPPC TYVGHPLIEQ
LASLRPTPEE QARREAAPPR LLVLPGSRRS EVGRHMPVFG ETLARLQAQG IAFEAVLPTT
PHLEAAVKAG VANWPVQPTI IMGEAEKRSA FRSARAALAK SGTVTLELAL AGVPMVTAYR
VGQVEAFILR RLVKVPSVIL ANLVIGEAVI PEFLQEDCTA DNLAPVLVDL LKDGPVRARQ
VAAFSRLDSI MATGAASPSE RAADIVLATM RRERAPG
|
|---|
| |