| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | BBta_3879 |
|---|
| Symbol | |
|---|
| ID | 5149150 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Bradyrhizobium sp. BTAi1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009485 |
|---|
| Strand | - |
|---|
| Start bp | 4064955 |
|---|
| End bp | 4065737 |
|---|
| Gene Length | 783 bp |
|---|
| Protein Length | 260 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 63% |
|---|
| IMG OID | 640558715 |
|---|
| Product | putative polysaccharide deacetylase |
|---|
| Protein accession | YP_001239859 |
|---|
| Protein GI | 148255274 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG0726] Predicted xylanase/chitin deacetylase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 13 |
|---|
| Plasmid unclonability p-value | 0.827287 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 30 |
|---|
| Fosmid unclonability p-value | 0.456812 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAACCCTG AGGCGCTCGG CGTCGGCCGC ACCGTCGAGA TCGACACCAC AGGCGGTCCC
GGATTCGGCT TCGAGCACTT CAAGGATCTC GACTTCCTCA AGGATCACGA GGTCGTGCTG
ACCTTCGACG ACGGCCCGTG GCCGGAGAAC ACCCCCGGCG TGCTCAAGGC GCTCGCCGAC
CAGTGCACGA CGGGCATCTT CTTCATCATC GGCAAGCACG CGACCTACTA TCCGGAGATA
CTGAAGCAGG TCTACAACGC CGGCCACACT GTGGGCACGC ACACTTGGTC GCACGCCGCG
CTGACCAACA AGAAGCTTAC GGAGGACCAG CGCAAGGAGG AGATCGAGCT CGGCATCAGC
GCCGTGAAAT GGGCGCTTGG CGGCAACTCG CCTGCTCCGT TCTTCCGCTT CCCGGCGCTG
CAGCATCCGC CGGAGATGGT GACCTATCTC GGCACCCGCA ACATCGGCAT CTTCTCCTGC
GACCTCGACT CGTTCGACTT CAAGGCGCGC AATGCGCAGG CGGTGATCGA CGTCACCTTC
AAGAAACTCG ACAAGCTCGG CAAGGGCATC ATCCTGATGC ACGACTTCCA CAAGCACACG
GCCGAAGCGC TGCCCGAACT GCTGCGCCGC CTCAAGGCCG GCGGCTACAA GGTCGTCGCG
ATGCGGGCCA AGGCCCCGGT GCAGTCGCTG CCGCAATATG ACGAGCAGCT CGCGAAGGTC
GCCAAGCTGC CGACGGTGAG CCAAAGGCCG GTGTCGAGCG TTGTGACGAC AGTGTCTGAA
TGA
|
|---|
| Protein sequence | MNPEALGVGR TVEIDTTGGP GFGFEHFKDL DFLKDHEVVL TFDDGPWPEN TPGVLKALAD
QCTTGIFFII GKHATYYPEI LKQVYNAGHT VGTHTWSHAA LTNKKLTEDQ RKEEIELGIS
AVKWALGGNS PAPFFRFPAL QHPPEMVTYL GTRNIGIFSC DLDSFDFKAR NAQAVIDVTF
KKLDKLGKGI ILMHDFHKHT AEALPELLRR LKAGGYKVVA MRAKAPVQSL PQYDEQLAKV
AKLPTVSQRP VSSVVTTVSE
|
|---|
| |