| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | BBta_3626 |
|---|
| Symbol | |
|---|
| ID | 5153069 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Bradyrhizobium sp. BTAi1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009485 |
|---|
| Strand | - |
|---|
| Start bp | 3791715 |
|---|
| End bp | 3793595 |
|---|
| Gene Length | 1881 bp |
|---|
| Protein Length | 626 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 68% |
|---|
| IMG OID | 640558472 |
|---|
| Product | sigma-54-dependent transcriptional regulator HTH Fis-type family |
|---|
| Protein accession | YP_001239618 |
|---|
| Protein GI | 148255033 |
|---|
| COG category | [K] Transcription
[Q] Secondary metabolites biosynthesis, transport and catabolism |
|---|
| COG ID | [COG3284] Transcriptional activator of acetoin/glycerol metabolism |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 13 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 25 |
|---|
| Fosmid unclonability p-value | 0.139273 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCTGCCTG CCAGCCGGCG CCTCGATGGC GCGTGGTTGA AGCTCGACGA TGAGGGGCAT
CCGCCAGCCG GTCTGATGTC GGCCGACATC TACGACAGCT GGATGCGCTG CATCACGTTG
GGTCTCGATG CGCTGCGTCC GCCCTCGCCC GAATTCGTCG ATGCCGCCGT GCTGCGGCAG
GAGCAGCAAC GCTGCTCGCT GGTGCGCGGC CTCGCTTTGG CCGAGATGCA CACGCTGCAT
CAGCAGATCG CCGGCTCCAA TTTCATGATC GCGTTTGCCA CCGCCGAAGG GCTTCTGCTC
GACAGCATCT CGGATTCCAG CTTCAGCGAT GCGTCAGATG CCGCCTGCAT CCGCGCGGGC
TCGATCTGGA CCGAGAGCAT CTGCGGCACC AATGGGCTCG GCACGGCGGC CTATCTGAAG
CGGCCGATCG TCGTGCACGG CCGCGAGCAC TTTTTCGCCC GCTACAACAA CCTGACCTGC
GTGGCGGCGC CGATCTTCGC GCCCGACGGC GAGGTCGCCG GCATCCTCGA CGCGTCGTCC
GATTGCATGT CGCGCCAGGC GCACACACAG GCGCTGGTGG CGATGGCCGC GACCCAGATC
GAGAACGGGC TGTTCCGCGA GCAGCATCGC GGCAACATAC TGATCGCCTT CCACAACCGC
GGCGAATATC TGCACACGCT GAGCGCCGGC CTGCTGGCCG TCGACAATGA CGGCCGGATT
CTCGCCGCCA ACCGCGCCGC GCGTGTGCTG CTGCACGGCC TGCCGGCCTT CGCCGGCCGC
CTGTTCGGCG ATGTGTTCCG TGGCCGGTTC AGTGACTTCG TCGACGAGGG CCGGCGCAAG
GAGCGACAGC GGCTCGAGGA CGATGTCGGG AGCCAGTTCG TCGCGACGAT CGAGAACAGC
CGCCAGTTCC CGATGACGCA TCGCGTGCTG GCACCACGGC CCGCGCCGCC GAAGAGCCCG
GCGGCGGCGT TCGTCTCCGC CGATCCGAGG ATCGCGGCCA TCGTGCAGCG CGTCGCCATC
GCCGCCGCGC GCAAGATGCC GATCCTCATT CGCGGCGAGA CCGGCACCGG CAAGGAGCAG
ATGGCACGGC ACGCCCATGC GGCGAGCCAG CGCGCCGGCT CCTTCGTCGC CGTCAATTGC
GCCGCCCTTC CCGACAGCCT GATCGAGGCC GAGCTGTTCG GCTATACAGA AGGCGCCTTC
ACCGGTGCCA GGAAAGGCGG CTCGGCCGGC CTGTTCAAGG AGGCCGATGG CGGCACGCTT
TTTCTCGACG AGATCGGCGA CATGCCGGTG ACGTTGCAGG CAGTGCTGCT GCGCTTCCTC
GACGACTGGA CGGTGCGGCC GGTCGGCGGC AGCAAGCGCG AGGTCGACGT GCTCCTGGTG
TCGGCCACCA ACGCCAATCT CGACGACGCG ATCGCCAAAG GCCGCTTCCG ATCCGACCTG
CTGTTTCGCC TCAACACGCT CGAAGTGACG CTGCTGCCGC TGCGCGAGCG CACCGACTTC
GCCGACATCG CCCGCCATTT GATGGCGAAG ATCGATCCGT CGATCGCACT GTCCGAGGCT
GCCATTCAGC GGCTTGCACA GCGGAGCTGG GACGGCAACA TCCGCGAGCT TCGCAACGTC
CTGGCGCGGC TGTCGCTCAG CGAGACCGGC CCGGTAATCG ACGCCGCCAC CGTCGACGCC
GCCATCGGAC CCGGCAGCGC CGAGCCCGTC GCGCCAAAGA TCAAGATGAA CGAAAGCGCA
CCGGCCGACC TGCACGAGAT CCAGCGCGCC CTCGTGCTCG CCACCTTCGC GGAGACCGGC
AACAATATCA GCAAGACGGC GCGGCGGCTC GGCATCTCGC GCAACACCGT CTATCGCGCG
CTGCGCGGCA AGCCGGGCTG A
|
|---|
| Protein sequence | MLPASRRLDG AWLKLDDEGH PPAGLMSADI YDSWMRCITL GLDALRPPSP EFVDAAVLRQ
EQQRCSLVRG LALAEMHTLH QQIAGSNFMI AFATAEGLLL DSISDSSFSD ASDAACIRAG
SIWTESICGT NGLGTAAYLK RPIVVHGREH FFARYNNLTC VAAPIFAPDG EVAGILDASS
DCMSRQAHTQ ALVAMAATQI ENGLFREQHR GNILIAFHNR GEYLHTLSAG LLAVDNDGRI
LAANRAARVL LHGLPAFAGR LFGDVFRGRF SDFVDEGRRK ERQRLEDDVG SQFVATIENS
RQFPMTHRVL APRPAPPKSP AAAFVSADPR IAAIVQRVAI AAARKMPILI RGETGTGKEQ
MARHAHAASQ RAGSFVAVNC AALPDSLIEA ELFGYTEGAF TGARKGGSAG LFKEADGGTL
FLDEIGDMPV TLQAVLLRFL DDWTVRPVGG SKREVDVLLV SATNANLDDA IAKGRFRSDL
LFRLNTLEVT LLPLRERTDF ADIARHLMAK IDPSIALSEA AIQRLAQRSW DGNIRELRNV
LARLSLSETG PVIDAATVDA AIGPGSAEPV APKIKMNESA PADLHEIQRA LVLATFAETG
NNISKTARRL GISRNTVYRA LRGKPG
|
|---|
| |