Gene BBta_3603 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagBBta_3603 
Symbol 
ID5152635 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameBradyrhizobium sp. BTAi1 
KingdomBacteria 
Replicon accessionNC_009485 
Strand
Start bp3768840 
End bp3770309 
Gene Length1470 bp 
Protein Length489 aa 
Translation table11 
GC content68% 
IMG OID640558452 
Producthypothetical protein 
Protein accessionYP_001239598 
Protein GI148255013 
COG category[V] Defense mechanisms 
COG ID[COG1566] Multidrug resistance efflux pump 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones15 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones20 
Fosmid unclonability p-value0.0158182 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGACCGATC GCTTCGATGA CGGTTTCAAG CCATCGCCCG CGCCGCGCGT CGCCCCCAGG 
ACAGACCAGT CGCGCCATCC CGTGATCCTG CGCGCCTCCG CCTTCGGCGT CGCCGGCATC
TTGTCGGCGC TGATGCTGAC GGCCGTGGTG CCGCCGATCG TGGCCGACCA ATCCGACCGC
GCCGTCGTGG ATGCGCCTGT GATGCTGCTG ACCTCGCCGA TCTCGGGCCA GGTCGAGTCG
CTCACGGCGA CATCCGGCGG CGAGGTGCGC AGCAGCGATC GTCTGGCCCA GATCACCAAT
CCGCGGCTCG ACCGGACCAC CCTGATCTCG CTGCAGGAAA AGGCCGGCGA CGCGCGCCAG
AAGCTCGACG CGACCCGCGC CAAGCATCAA TCGGACCTCG CTTACGTCGC CTCCCTCGAT
CAGGAGATCG CCAGCCAGGC CGACCAGTTG AAGGCACAGC TGCAGTCGCA GATCGAGGAG
CTGCGCGCCC GCGTCGCGCA ATCCGCCGCC ATGAGCAGCG AGAAGAAGGC GATCGTCGAA
CGTCAGAACC GTATGGTGGC GCGCGATGCG GCCAGCGCCG AGATGCTGAA GCCGACCGAG
CAGCAATATG CGGCGGCGCT GCACGACACC GACGCGCAGA ATGCCAAGCT CAATCAGAAG
CTGACCCAGC TGAAGGCGCT CAACGCCGGC ATCTATGTCG GCGAGGATCT GGTCGCGCTC
AACATGCTCG GCCAGAAGCG CCGTGACATC GACCTCGACG CACGACGGAT GGAGATCGAG
GAGAAGCAGC AATCGGCGAT GCTCGACGAT CTCGAAGGCT TGCTCAAATC CGAGAGCGCG
CGGCTTGCCC GGCTCGCGGC AGCCGATGTG CTCTCGCCGG GGTCCGGCAG GGTGCTCGCG
GTGGGCGCCG AGACTGGACG CCAGGTCAGC GCCGGCGATA CGATCGCCTC CGTGGTCGAT
TGCGACAAGC GCTTCGTCGT GGCGATCTTC TCCTATCGCC AGGGTGAATC GATGAAGCCG
GGCACCAAGG TCCGCATCGA GGGCGGCGGT TATCACAGCG GCACGGTCAG CGCCGTGCTG
CCGAAGACCA GCGACAAGGT CGATGAGCGC TTCGCCGTGC CGTTTCCGCA GACCGAGCGC
CGCGAGCTCT ATGTCATGAT CACGCCAGAT GCCGCCGATG AAAAGCCTGC CGCGGAGCCT
GCCTCCGCGG CGACGCCGGC CTGCACGGTC GGGCAGTGGG TCACCGTCAC CCGCGACAAC
GGCATCGTGC CGTCGATGTC GGTGACGTGG CGGCGGCTCG GACATCTGGT GGCCTCGCTG
GCCGATCTCG ATCCGGCGGC GCCGGACGAA GCGACACGGC GGGCCGGCGT CGCCAAGCTC
GACGAGGCGC TGCGATCGCC GTCGGCCGCG CAGCGGTCGC AGCTCGACGA GCCTTGGTTG
CCGGTGTCGA GCGCGGTGTC GGCGCAATGA
 
Protein sequence
MTDRFDDGFK PSPAPRVAPR TDQSRHPVIL RASAFGVAGI LSALMLTAVV PPIVADQSDR 
AVVDAPVMLL TSPISGQVES LTATSGGEVR SSDRLAQITN PRLDRTTLIS LQEKAGDARQ
KLDATRAKHQ SDLAYVASLD QEIASQADQL KAQLQSQIEE LRARVAQSAA MSSEKKAIVE
RQNRMVARDA ASAEMLKPTE QQYAAALHDT DAQNAKLNQK LTQLKALNAG IYVGEDLVAL
NMLGQKRRDI DLDARRMEIE EKQQSAMLDD LEGLLKSESA RLARLAAADV LSPGSGRVLA
VGAETGRQVS AGDTIASVVD CDKRFVVAIF SYRQGESMKP GTKVRIEGGG YHSGTVSAVL
PKTSDKVDER FAVPFPQTER RELYVMITPD AADEKPAAEP ASAATPACTV GQWVTVTRDN
GIVPSMSVTW RRLGHLVASL ADLDPAAPDE ATRRAGVAKL DEALRSPSAA QRSQLDEPWL
PVSSAVSAQ