| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | BBta_3371 |
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| Symbol | trbF |
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| ID | 5154987 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Bradyrhizobium sp. BTAi1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009485 |
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| Strand | + |
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| Start bp | 3527761 |
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| End bp | 3528444 |
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| Gene Length | 684 bp |
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| Protein Length | 227 aa |
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| Translation table | 11 |
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| GC content | 65% |
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| IMG OID | 640558229 |
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| Product | conjugal transfer protein TrbF |
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| Protein accession | YP_001239376 |
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| Protein GI | 148254791 |
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| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG3701] Type IV secretory pathway, TrbF components |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 9 |
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| Plasmid unclonability p-value | 0.143707 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 35 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | ATGTTCAAAC GTCCCGCTGT CCATTACGGC CGCACGCTGC AACCGGTCAC GCCGTATCAG
AAAGCTGCGC AGGTCTGGGA TGAGCGCATC GGCTCGGCGC GTGTGCAAGC CAGGAATTGG
CGGCTGATGG CGTTCGGGTG CCTGACGCTG GCTAGCGGCC TGGCCGCAGC CCTCGTCTGG
CAATCGGCAC GAGGCAGTGT GACGCCCTGG GTGGTGGAGG TCGGCCATCT CGGAGACGTA
CAGCGGGTGG CCCCCGCGAT TGCCGAGTAT CAACCGACCG ATCCGCAGAT CGCCTTTCAT
CTCGCGCGCT TCATCGAGGA CGTGAGAAGC CTCCCCGCCG ATCCCATCGT CCTGCGCCAG
AGCTGGCTGC GCGCCTATGA CTTCACGAGC GATCGCGGGG CAGCAGCGCT CAATGACTAC
GCCCGGACGA ACGATCCGTT CGCGAGGCTC GGCAAAGCCC AGGTCTCGGT GGAGGTCTCC
AGCGTCATCC GGGCCTCGTC CGAGAGCTTT CGCGTGGCAT GGATCGAGCG GCACTACGAC
AATGGCGCGC TGAGTGCGAC GGAGCGCTGG ACCGCCATTC TCACCATCGT GCTCGCGATG
CCTGACGATG CCGACCGGCT GCGCAAGAAC CCTCTTGGGG TTTATGTCCA CGCCATCAGC
TGGTCGAAGG AGCTGTCGCA ATGA
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| Protein sequence | MFKRPAVHYG RTLQPVTPYQ KAAQVWDERI GSARVQARNW RLMAFGCLTL ASGLAAALVW
QSARGSVTPW VVEVGHLGDV QRVAPAIAEY QPTDPQIAFH LARFIEDVRS LPADPIVLRQ
SWLRAYDFTS DRGAAALNDY ARTNDPFARL GKAQVSVEVS SVIRASSESF RVAWIERHYD
NGALSATERW TAILTIVLAM PDDADRLRKN PLGVYVHAIS WSKELSQ
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