| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | BBta_3179 |
|---|
| Symbol | |
|---|
| ID | 5150733 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Bradyrhizobium sp. BTAi1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009485 |
|---|
| Strand | + |
|---|
| Start bp | 3329270 |
|---|
| End bp | 3331039 |
|---|
| Gene Length | 1770 bp |
|---|
| Protein Length | 589 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 51% |
|---|
| IMG OID | 640558045 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | YP_001239198 |
|---|
| Protein GI | 148254613 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 4 |
|---|
| Plasmid unclonability p-value | 0.0527529 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 27 |
|---|
| Fosmid unclonability p-value | 0.2612 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAGCCCGT GGCGTCCGCA TTCAGCCCAA AACGGACGTC GGCTACGGGT CAAGAGAGGC
TGTGGCCCGT CGCGTTCTGA GGCCCGCTTC CTATGCAACC CGGATCAAGA TACGCTTCTC
TGGTCCGGCT CGGAGATTAA AGAGTCGGCG GCGGGAGTTC TTAGCCGGGA TAGGGAGCGC
AACGGTCGCG TGCAATGCAA AATGGCATTT CCGGTTGAGA AGTTGGACCT CGAGCTCGCC
CTCAAGCGAG TGAAATCTGA TCTAAATACT GCACGCTCTT TTATCGAGTC TCCTTTGGAG
ATCGAGTTGG TTGATGCCGA TCAGGCCACT TGGCTGAGTC AGCTTAGCGA AAAAATTGCC
GCCGGATATC GTCCCCACTC TGCTGTGATC GCGGACATTC CTAAAGGAAA TGGCGCAGTT
CGTCCTGCAG CCCTCCTCAA TCTTGAGGAT CGCGTGGTGT ATGCAGCTGC AGTTGGCGCC
TTGCTTTCGG CTATCAACCT CGGATTAGGT TGGTCTCAAG GTAAGGTCGA CTTTTCATAT
CGGCTTTCCG AGAGCGTCCG GCGGGTTGAG TGGTTCACAA ATCGCTTCAA TGGCTGGTCT
GCATTTCGCA AAGTCAGCGT CGAGCGGATT GATAATGGCG CGGCTCACGT CGTTCTTACC
GACATTACGG GATTCTACGA AAACATAGAT TTGACGGTTC TGTTTTCGGA CTTGAGAACG
CTCGGCGCTG ATAGCGACGT AATCCAATTG CTTCAGCTCT GCCTGAATCG ATGGGCTGTC
GTGCCCAATC GCGGAGTTCC ACAAGGACTT TCCGCCTCGG ATGTGCTGGC CAAGGTTTAC
CTAAACCCAA TTGACCAAGC CATGGCAGAC ATGCAAGTCG ACTTTATTCG TTACGTGGAC
GACATACGAA TTTTTTGTTC AGACGTACCA GCTTGCAAAA AAGCACTGAT GTCTCTGATC
CGATCTCTCC GCCGACGGGG TCTAAATTTG CAGTCGGCAA AGACGGAAAT CGTTTCAGCA
GCTGAAGCCA AAGCTATCAT CGAGGGTATC GCTCCGATAA TAACTGACGT ACAAAAGCAG
TATAGGGACT TTCTCATTAA AACAATGGAG TCGATTAATC CCTACATGAC GATAGAGGAC
CTTGATGACA AGGTGAGTCC GGATGATGCG CCAGTGGAGG TCGTGCGAGA GGTTTTCCGT
CAGAAGTTTA TAGATGCGCC TGGAAAATTC AACAAAACCC TATTTCACTT TCTTATAAAT
CGCCTTCGAG CACAATCCGA CGACTACGCA TTGGCATATT GCCTTGAACA CTTGGCAACC
CAACCACAAG AGACCCAATC CCTCTTGGAC TACATTGGCG CGGTTGGAAC ATTTCCAAGA
GATTTTACTC CAATTGAGAG TTTTCTCCAG TCGCCTGATT GCATGTATGA CTATCAAGTC
TATCAGATTT TTCGATGGCT GCACTCGTTA GGCTCTCCAC CGAGTGTTGG GTTGATTACT
GTCGCCCGAC TCATAACCTT CGACAATGCG CGAGCGTTCT ATCTGAGGGC AGTATGCCGC
TTGATCTTAC AGACCCACGG ATCGATGGCT GATCTGGAGC GTTTGGAGGC CGGTTACGGC
GAAGTCCACA ACGAATTGGA GCGAGCGCAA GTCCTCGTGA GCATTAAACG ACTAGAGGTC
GGACGGAGAA ACGCGTTCTA CGGTCGGGTA AGTGGAGATG GGCAGCTTTG CGAGCGAGCA
ATTAGAATGG TCAAGGAGCA AAGGCTTTAG
|
|---|
| Protein sequence | MSPWRPHSAQ NGRRLRVKRG CGPSRSEARF LCNPDQDTLL WSGSEIKESA AGVLSRDRER
NGRVQCKMAF PVEKLDLELA LKRVKSDLNT ARSFIESPLE IELVDADQAT WLSQLSEKIA
AGYRPHSAVI ADIPKGNGAV RPAALLNLED RVVYAAAVGA LLSAINLGLG WSQGKVDFSY
RLSESVRRVE WFTNRFNGWS AFRKVSVERI DNGAAHVVLT DITGFYENID LTVLFSDLRT
LGADSDVIQL LQLCLNRWAV VPNRGVPQGL SASDVLAKVY LNPIDQAMAD MQVDFIRYVD
DIRIFCSDVP ACKKALMSLI RSLRRRGLNL QSAKTEIVSA AEAKAIIEGI APIITDVQKQ
YRDFLIKTME SINPYMTIED LDDKVSPDDA PVEVVREVFR QKFIDAPGKF NKTLFHFLIN
RLRAQSDDYA LAYCLEHLAT QPQETQSLLD YIGAVGTFPR DFTPIESFLQ SPDCMYDYQV
YQIFRWLHSL GSPPSVGLIT VARLITFDNA RAFYLRAVCR LILQTHGSMA DLERLEAGYG
EVHNELERAQ VLVSIKRLEV GRRNAFYGRV SGDGQLCERA IRMVKEQRL
|
|---|
| |