| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | BBta_3168 |
|---|
| Symbol | |
|---|
| ID | 5150694 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Bradyrhizobium sp. BTAi1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009485 |
|---|
| Strand | + |
|---|
| Start bp | 3316446 |
|---|
| End bp | 3318203 |
|---|
| Gene Length | 1758 bp |
|---|
| Protein Length | 585 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 62% |
|---|
| IMG OID | 640558035 |
|---|
| Product | putative flagellar hook-associated protein 1 (HAP1, FlgK protein) |
|---|
| Protein accession | YP_001239188 |
|---|
| Protein GI | 148254603 |
|---|
| COG category | [N] Cell motility |
|---|
| COG ID | [COG1256] Flagellar hook-associated protein |
|---|
| TIGRFAM ID | [TIGR02492] flagellar hook-associated protein FlgK |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 9 |
|---|
| Plasmid unclonability p-value | 0.993978 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 26 |
|---|
| Fosmid unclonability p-value | 0.158632 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTCGCTCG ATATAGCCCG TCTTGTCGCC TTCAGCGGCA TCTCCGCCAC GGAGCTGCAG
ATCAGTGTGG CGTCGTCGAA TATCTCGAAT GCCGACACCA AAGGCTACAC GGAAAAGTCG
GCGAATCAGG TCGCGACCGT TACAGGCGGC GTCGGAACCG GCGTTTCGAT TACCGGCATA
TCGAGCAACG TCGACAAGCT GCTGCTGAAA TCGCTGATCG GCGCCAATTC GGAGCTCGGT
GCCGCCGACA CGACCAACAG CTATCTGGAG CAGCTGCAGC AGCTGTTCGG CAGCGCGTCG
ACATCTGGGA CCTCGACGAC CGGAACGTCG CTGGCGAACG CGCTGGCATC GCTGGAATCG
GCGTTGTCGT CGCTGGCAAG TTCGCCGAGC AGCGTGTCGC TGCAATCGGC CGCGGTCAGT
GCGCTCGATG ACTTTGCGAG TCAGCTGCGC AGCACGTCGA GCGGCGTGCA GAGTCTGCGT
GCGAATTCCG ACAAGGACAT CGCCTCCTCG GTCAAAAGCG TGAACGATGA TCTGCAGCAG
ATTGCGGATC TGAATGTCCA GATCCGCAAG ATGGCGGCGG CCGGGCAGTC GACGGCAGAT
CTCGAGGACC AGCGCAACTC CGCGCTGCAG GACCTGTCGT CCTATATGAA CGTCAGCTAC
TATACCGCCT CGAACGGCGA CCTTCAGGTC TATACGTCGT CGGGGCGTGC TCTCGTCGAC
AGCTCGGCGC ACACGCTGAG CTATACCGCG TCCGCGAATG TCTCGGCGTC GTCGAGCTAT
TCGTCTGGCG GCTTCAGCGG CATCATGGTC GACGGCGTGG ATGTCACGTC GCAGATCACG
TCCGGCAAGA TCGGCGCATT GATCACGTTG CGCGACCAAA CCCTGCCGGC GACGCAGACG
CAGCTTGATC AGCTTGCCAC GGAGCTGAAA TCGGCGCTGA ACGCGATCAC CAACGGCGCG
TCGGCGGTTC CGCCGCCGAC CAGCCTGACC GGCTCTGCCA GCGTGAGCAG TACAACCGCG
CTGGCGGCGT CCGGAACGGT GCGGATCGCG GTAGCCGATC AGAGCGGCAA TCTCGTCTCG
TACAAGGACC TCGATCTGTC GTCCTACGCC ACGGTCGGCG ATCTGGTGAC GGCACTCAAC
GGCATTTCCG GTGTGTCCGC CTCGCTCGAT TCGAGCGGAT ACCTGTCGAT CAGCGCGACA
TCGTCGTCCA ACGGCATCGC GATCAACGAC ATGACGAGTT CGGTCGGCGG GGGCGGTTTT
TCCGAGTATT TCGGGATGAA TGACCTCGTC ACCGGCACAG GCGCCGCCAA TTTCGCCGTC
GACAGCAGTA TTCTCAGCGG TGCCGCCGGA CTGCCGACTG GAACCCTCGA CAATTCGGCC
ACATTGACCA CCGGCAGCCA GGTGCTGACG TCCGGCTCGG CCACGATCAT CAACCAGCTC
TATGACAAGC TGACCGGCTC GACGAGCTTC TCGTCTGCGG GAGGCCTGAG CGCGACCACC
GGCTCGTTCG CCGATTATGC CGCAGCGATC GTCGCCAATG TGGCAAGCAA GGCAACCCAG
GCGTCGAGTA ACTATACTGC CAAATCGACC GCCCAAGCCA GCTATGCGAG CTCGCTGTCG
TCGCAGTCGG GCGTGAATAT CGACGAGGAG ACCGCGCGCG TGAGTTCGCT GCAAAACAAA
TACGCGGCGG CGTCGCAGCT GATCTCCGTG GTCAACAGCA TGTTCTCGTC GCTGCTCACT
GCCGTGCAAT CGACTTGA
|
|---|
| Protein sequence | MSLDIARLVA FSGISATELQ ISVASSNISN ADTKGYTEKS ANQVATVTGG VGTGVSITGI
SSNVDKLLLK SLIGANSELG AADTTNSYLE QLQQLFGSAS TSGTSTTGTS LANALASLES
ALSSLASSPS SVSLQSAAVS ALDDFASQLR STSSGVQSLR ANSDKDIASS VKSVNDDLQQ
IADLNVQIRK MAAAGQSTAD LEDQRNSALQ DLSSYMNVSY YTASNGDLQV YTSSGRALVD
SSAHTLSYTA SANVSASSSY SSGGFSGIMV DGVDVTSQIT SGKIGALITL RDQTLPATQT
QLDQLATELK SALNAITNGA SAVPPPTSLT GSASVSSTTA LAASGTVRIA VADQSGNLVS
YKDLDLSSYA TVGDLVTALN GISGVSASLD SSGYLSISAT SSSNGIAIND MTSSVGGGGF
SEYFGMNDLV TGTGAANFAV DSSILSGAAG LPTGTLDNSA TLTTGSQVLT SGSATIINQL
YDKLTGSTSF SSAGGLSATT GSFADYAAAI VANVASKATQ ASSNYTAKST AQASYASSLS
SQSGVNIDEE TARVSSLQNK YAAASQLISV VNSMFSSLLT AVQST
|
|---|
| |