| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | BBta_2893 |
|---|
| Symbol | |
|---|
| ID | 5153177 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Bradyrhizobium sp. BTAi1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009485 |
|---|
| Strand | - |
|---|
| Start bp | 2999706 |
|---|
| End bp | 3000995 |
|---|
| Gene Length | 1290 bp |
|---|
| Protein Length | 429 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 63% |
|---|
| IMG OID | 640557772 |
|---|
| Product | putative ABC transporter substrate-binding protein |
|---|
| Protein accession | YP_001238926 |
|---|
| Protein GI | 148254341 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG0687] Spermidine/putrescine-binding periplasmic protein |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 14 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 24 |
|---|
| Fosmid unclonability p-value | 0.0883861 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACTGATC GATCGAAAAA GACATCCATC AGCCGCCGCT CGCTGCTCAA GGGCGCGGCC
GGCGTCGCCG GTCTCGCCGG CTCAGGCACG CTGCTCAGCG CGCCCTATGT CCACGCTGCC
GACCCCAAGG TGCTGCGCTA TCTCGGCACC GCGGTGAACG AAGGCGACGA GATCTCGAAA
AAGTGCCTCG CCGACACCGG CATCAAGATC GAATACATCA CTGCCACGAC CGACGACGTC
ACCAAGCGGG TCATCACCCA GCCGAACTCG TTCGACGTGC TCGACACCGA ATATTTCTCG
CTCAAGAAGC TGGTGCCCTC GGGCAACATC TTCCCGCTCG ATGCGCGCAA GATCAAGGAA
TTCGACAATA TCACGCCCGT CTTCACCAAG GGCGAGCTGC CGAACGGCAA GAAGATCGGC
GGCCAGGGCA CCGCGCCGTG GAAGGTGCTC TATCTCGAGG GAGCGAACTC CAAGACCTTC
TCGGCGACGC CGACCGAGTA CGTCACGCTC ATCCCGACCG TCTACAACGC CGATACGCTC
GGCATCCGCC CAGACCTGAT CAAGCGCCCG ATCTCGTCCT GGGCCGAGCT GCTCAACCCC
GAGTTCAAGG GCAAGGCCTC GATCCTCAAC ATCCCCTCGA TCGGCATCAT GGACGCCGCC
CTCGTCGTCG AGGCGACCGG CCAGTACAAA TATGCCGACA AGGGCAACAT GACCAAGGCC
GAGATCGACT TGACCATGAA GGTGCTGACC GAGGCCAAGA AGGCCGGCCA GTTCCGCGCC
TTCTGGAAGG ACTTCAACGA GTCGGTCAAC CTGATGGCCT CGGGCGAGAC GGTGATCCAA
TCGATGTGGT CGCCGGCGGT CACTAAGGTG CGCTCGATGG GCATCCCCTG CGTGTTCCAG
CCGCTCAAGG AAGGCTATCG CTCCTGGGCC TCCGGCTTCT GCGTGTCCAA AGCCGTCGCC
GGCGGGCCGA AGCTCGACTG GGCCTATGAG TTCGTCAACT GGTACCTGTC CGGCTGGGCC
GGCGCCTATC TCAATCGCCA GGGCTACTAC TCGGCCGTGC TGTCCACCGC CAAGGCCAAC
ATGACCGAGG ACGAGTGGGG CTACTGGATG GAAGGCAAGC CGGCGAAGAA CGACATCAAG
GCGCCGGACG GCACCCTGAT GGAGAAGGCC GGCGCCGTGC GCGACGGCGG CTCCTATGAG
GACCGCATGG GCAATGTGGT CTGCTGGAAC GCCGTCATGG ACGAGAACGA CTACATGGTG
CGCAAGTGGA ACGAGTTCAT CGCCGCCTGA
|
|---|
| Protein sequence | MTDRSKKTSI SRRSLLKGAA GVAGLAGSGT LLSAPYVHAA DPKVLRYLGT AVNEGDEISK
KCLADTGIKI EYITATTDDV TKRVITQPNS FDVLDTEYFS LKKLVPSGNI FPLDARKIKE
FDNITPVFTK GELPNGKKIG GQGTAPWKVL YLEGANSKTF SATPTEYVTL IPTVYNADTL
GIRPDLIKRP ISSWAELLNP EFKGKASILN IPSIGIMDAA LVVEATGQYK YADKGNMTKA
EIDLTMKVLT EAKKAGQFRA FWKDFNESVN LMASGETVIQ SMWSPAVTKV RSMGIPCVFQ
PLKEGYRSWA SGFCVSKAVA GGPKLDWAYE FVNWYLSGWA GAYLNRQGYY SAVLSTAKAN
MTEDEWGYWM EGKPAKNDIK APDGTLMEKA GAVRDGGSYE DRMGNVVCWN AVMDENDYMV
RKWNEFIAA
|
|---|
| |