| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | BBta_1355 |
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| Symbol | shc |
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| ID | 5156025 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Bradyrhizobium sp. BTAi1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009485 |
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| Strand | - |
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| Start bp | 1440448 |
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| End bp | 1442502 |
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| Gene Length | 2055 bp |
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| Protein Length | 684 aa |
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| Translation table | 11 |
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| GC content | 67% |
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| IMG OID | 640556337 |
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| Product | squalene-hopene cyclase |
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| Protein accession | YP_001237496 |
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| Protein GI | 148252911 |
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| COG category | [I] Lipid transport and metabolism |
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| COG ID | [COG1657] Squalene cyclase |
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| TIGRFAM ID | [TIGR01507] squalene-hopene cyclase
[TIGR01787] squalene/oxidosqualene cyclases |
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Plasmid Coverage information |
| Num covering plasmid clones | 12 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 23 |
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| Fosmid unclonability p-value | 0.06763 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGACTGTGA CCAGCTCGGC CTCCGCGCGT GCGACGCGCG ACCCGGGAAA TTATCAGACT
GCCCTGCAAT CGACGGTGCG CGCGGCGGCG GATTGGCTGA TCGCCAACCA GAAGCCGGAC
GGCCATTGGG TCGGCCGCGC CGAGTCCAAT GCCTGCATGG AGGCGCAATG GTGCCTCGCG
CTGTGGTTCA TGGGGCTCGA GGACCATCCG CTGCGCAAGC GCCTGGGCCA GTCGCTGCTC
GACAGCCAGC GCCCGGACGG CGCCTGGCAG GTCTATTTCG GCGCCCCCAA TGGCGACATC
AACGCGACTG TCGAGGCCTA TGCCGCGCTC CGCTCGCTGG GCTTCCGCGA CGACGAGCCG
GCGGTGCGCC GGGCGCGGGA ATGGATCGAG GCCAAGGGCG GCCTGCGCAA CATCCGCGTC
TTCACCCGCT ACTGGCTGGC ACTGATCGGC GAATGGCCGT GGGAGAAGAC ACCGAACATC
CCGCCGGAGG TGATCTGGTT TCCGCTCTGG TTTCCGTTCT CGATCTACAA TTTCGCGCAA
TGGGCCCGCG CCACCTTGAT GCCGATCGCC GTGCTGTCGG CGCGGCGGCC GAGCCGGCCG
CTGCCGCCGG AGAACCGCCT CGATGCGCTG TTTCCGCATG GACGGAAGGC GTTCGACTAC
GAACTGCCGG TCAAGGCCGG CGCCGGCGGC TGGGACAGGT TCTTCCGCGG CGCCGACAAG
GTTCTGCACA AGCTGCAGAA CCTCGGCAAC CGTCTCAATC TCGGCCTGTT CCGCCCGGCG
GCCACCAGCC GCGTGCTGGA ATGGATGATC CGCCATCAGG ATTTCGACGG CGCCTGGGGC
GGCATCCAGC CGCCCTGGAT CTACGGGCTG ATGGCGCTCT ATGCCGAAGG CTATCCGCTC
AATCATCCCG TGCTCGCAAA GGGCCTCGAC GCGCTGAACG ATCCCGGCTG GCGCGTCGAT
GTCGGTGACG CCACCTACAT CCAGGCCACC AACAGCCCGG TCTGGGACAC GATCCTGACC
TTGCTCGCCT TCGACGATGC CGGCGTGCTC GGCGACTATC CCGAGGCCGT CGACAAGGCG
GTCGACTGGG TGCTGCAGCG GCAGGTGCGC GTGCCCGGCG ACTGGTCGAT GAAGCTGCCG
CATGTCAAGC CCGGCGGCTG GGCGTTCGAA TACGCCAACA ACTACTATCC CGACACGGAC
GACACCGCGG TCGCGCTGAT CGCGCTGGCG CCACTGCGCC ACGATCCGAA ATGGAAGGCC
AAAGGGATCG ACGAGGCTAT CCAGCTCGGT GTCGACTGGC TGATCGGCAT GCAGAGCCAG
GGCGGCGGCT GGGGCGCGTT CGACAAGGAC AACAACCAGA AGATCCTGAC CAAGATCCCG
TTCTGCGATT ATGGCGAGGC GCTCGATCCG CCCTCGGTCG ACGTCACCGC CCACATCATC
GAGGCGTTCG GCAAGCTCGG CATCTCGCGC AACCATCCGT CGATGGTGCA GGCGCTGGAC
TATATTCGCC GTGAGCAGGA GCCGAGCGGT CCGTGGTTCG GCCGCTGGGG CGTCAATTAC
GTCTACGGCA CCGGCGCGGT GCTGCCGGCG CTGGCCGCGA TCGGCGAGGA CATGACCCAG
CCCTATATCG GCCGCGCCTG CGACTGGCTG GTTGCCCATC AGCAGGCCGA TGGCGGCTGG
GGCGAGAGCT GCGCCTCCTA CATGGATGTC AGCGCGGTCG GCCGCGGCAC CACAACGGCC
TCGCAGACCG CCTGGGCGCT GATGGCGCTG CTCGCCGCCA ATCGCCCCCA GGACAAGGAC
GCGATCGAGC GTGGCTGCAT GTGGCTGGTC GAGCGCCAGT CGGCCGGCAC CTGGGACGAG
CCGGAATTCA CCGGCACCGG TTTCCCGGGC TACGGCGTCG GCCAGACCAT CAAGCTGAAC
GATCCCGCGC TGTCGCAGCG GCTGATGCAG GGCCCGGAAT TGTCCCGCGC CTTCATGCTC
CGCTACGGCA TGTACCGCCA CTACTTCCCG CTGATGGCGC TCGGCCGCGC CCTACGCCCG
CAGAGTCATA GCTAG
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| Protein sequence | MTVTSSASAR ATRDPGNYQT ALQSTVRAAA DWLIANQKPD GHWVGRAESN ACMEAQWCLA
LWFMGLEDHP LRKRLGQSLL DSQRPDGAWQ VYFGAPNGDI NATVEAYAAL RSLGFRDDEP
AVRRAREWIE AKGGLRNIRV FTRYWLALIG EWPWEKTPNI PPEVIWFPLW FPFSIYNFAQ
WARATLMPIA VLSARRPSRP LPPENRLDAL FPHGRKAFDY ELPVKAGAGG WDRFFRGADK
VLHKLQNLGN RLNLGLFRPA ATSRVLEWMI RHQDFDGAWG GIQPPWIYGL MALYAEGYPL
NHPVLAKGLD ALNDPGWRVD VGDATYIQAT NSPVWDTILT LLAFDDAGVL GDYPEAVDKA
VDWVLQRQVR VPGDWSMKLP HVKPGGWAFE YANNYYPDTD DTAVALIALA PLRHDPKWKA
KGIDEAIQLG VDWLIGMQSQ GGGWGAFDKD NNQKILTKIP FCDYGEALDP PSVDVTAHII
EAFGKLGISR NHPSMVQALD YIRREQEPSG PWFGRWGVNY VYGTGAVLPA LAAIGEDMTQ
PYIGRACDWL VAHQQADGGW GESCASYMDV SAVGRGTTTA SQTAWALMAL LAANRPQDKD
AIERGCMWLV ERQSAGTWDE PEFTGTGFPG YGVGQTIKLN DPALSQRLMQ GPELSRAFML
RYGMYRHYFP LMALGRALRP QSHS
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