| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | BBta_1128 |
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| Symbol | ycdM |
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| ID | 5153182 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Bradyrhizobium sp. BTAi1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009485 |
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| Strand | + |
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| Start bp | 1203423 |
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| End bp | 1204505 |
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| Gene Length | 1083 bp |
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| Protein Length | 360 aa |
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| Translation table | 11 |
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| GC content | 63% |
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| IMG OID | 640556116 |
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| Product | monooxygenase of the alternative pyrimidine degradation pathway |
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| Protein accession | YP_001237283 |
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| Protein GI | 148252698 |
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| COG category | [C] Energy production and conversion |
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| COG ID | [COG2141] Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases |
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| TIGRFAM ID | [TIGR03612] pyrimidine utilization protein A |
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Plasmid Coverage information |
| Num covering plasmid clones | 12 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 35 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGATTTGG GCGTCTTCAT CCCGATCGGC AACAATGGCT GGCTGATCTC CACGGCCTCG
CCGCAGTACA AGCCGACGTT CGAGCTCAAC AAGCAGATCG TGCAGCGGGC GGAGCATTAT
GGTTTCGAGT TCGCCCTTTC GATGATCAAG CTGCGTGGGT TCGGCGGCAA GAGCGAGTTC
TGGGACTACA ATCTGGAAAG CTTCACGCTG ATGGCGGGGC TGGCCGCGGT GACCTCGCGG
ATCAAGCTGT TCGCGTCCAC CGCAGTGCTG ACCCTGCCGC CGGCGATCGT CGCGCGCATG
GCAACCACCA TCGATTCCAT CTCCGGCGGC CGCTTCGGCA TCAATATCGT CTCCGGCTGG
GCCAAGGCCG AGTATGAGCA GATGGGATTG TGGCCCGGCG ACGACTATTT CGGCTACCGC
TACGCCTATT CGACCGAGTA TGTGCAGGTG ATGCAGGAGC TGTGGCGGAC GGGGGCCTCC
GACTTCAAGG GCAAGTACTT CCAGATGACG GACTGCCACA TGAAGCCGTT GCCGGCGCAC
AAGATCGAGA TCGTGGCGGC GGGGCAGAGT CCGACCGGCA TGGCCTTCGC CGCAACCTAC
GCCGACTATA ATTTCGTGCT CGCCTCCGGC GTCAACACGC CGACCGCCCA TGTCAAGCTC
AACGAGCAGT TGCTCGATGC GGTCGCCAAG ACCGGCCGCG ACGTCGGCGC CTATGTCCTG
TTCATGGTGA TCGCGGACGA GACCGACGAG GCGGCCATGG CGAAGTGGCA GGCCTACAAG
GACGGCACCG ATGTCGATGC ACTGGTCTGG ATGGCTGACC AGGGCTCGAA GGACCAGTCG
GCGGCGGGGT CCTCGACCGC CAAGACCATC AACCTGCCGG AGCAGGCGCT CAACTTCAAC
ATGGGAACCA TTGTCGGCTC CTATGCCACG GTGGCCAGGC TGCTCGACGA AGCCGCCAGC
GTGCCGGGGA CGAAAGGCTT GATGCTGACC TTCGACGATT TCGTCCAGGG CATTGAGAGC
TTCGGCCAGC ATGTCCAGCC GCTGATGACA TCCCGCGCCG CGCGGCTGTT GCCGGCGGCG
TGA
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| Protein sequence | MDLGVFIPIG NNGWLISTAS PQYKPTFELN KQIVQRAEHY GFEFALSMIK LRGFGGKSEF
WDYNLESFTL MAGLAAVTSR IKLFASTAVL TLPPAIVARM ATTIDSISGG RFGINIVSGW
AKAEYEQMGL WPGDDYFGYR YAYSTEYVQV MQELWRTGAS DFKGKYFQMT DCHMKPLPAH
KIEIVAAGQS PTGMAFAATY ADYNFVLASG VNTPTAHVKL NEQLLDAVAK TGRDVGAYVL
FMVIADETDE AAMAKWQAYK DGTDVDALVW MADQGSKDQS AAGSSTAKTI NLPEQALNFN
MGTIVGSYAT VARLLDEAAS VPGTKGLMLT FDDFVQGIES FGQHVQPLMT SRAARLLPAA
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