| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | BBta_0460 |
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| Symbol | hupU |
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| ID | 5154211 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Bradyrhizobium sp. BTAi1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009485 |
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| Strand | + |
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| Start bp | 459991 |
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| End bp | 460905 |
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| Gene Length | 915 bp |
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| Protein Length | 304 aa |
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| Translation table | 11 |
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| GC content | 60% |
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| IMG OID | 640555478 |
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| Product | uptake hydrogenase accessory protein hupU |
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| Protein accession | YP_001236651 |
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| Protein GI | 148252066 |
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| COG category | [C] Energy production and conversion |
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| COG ID | [COG1740] Ni,Fe-hydrogenase I small subunit |
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| TIGRFAM ID | [TIGR00391] hydrogenase (NiFe) small subunit (hydA) |
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Plasmid Coverage information |
| Num covering plasmid clones | 13 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 24 |
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| Fosmid unclonability p-value | 0.056837 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | ATGTCGTTCC TAAATGCGGA GGAACCAAGT GTCTGCGACC TTGTAACGGA CTTCGGCATC
AACGTGCTGT GGCACCCTTC GTTGGGTCTC GAGCTTGGTG AAAATCTCCA GAAGATGCTG
CGGGCCCTGA CGTCTGGCCA ACTGCCGCTC GACATTTTCG TTTTCGAGGG AACGGTGGTC
AATGCGCCGA ACGGCACCGG TGAATGGAAT CGCTTCGCCG GCCGTCCCAT GCGGGATTGG
GTTCATGATC TATCCAAGGT GGCAAACTTC GTGGTCGCCA TTGGCGACTG TGCGACGTGG
GGGGGCATTC CAGCCACAGC GCCAAACCCC TCCGAAAGCC AGGGACTCCA ATTCCTGAAG
CGTAGTCAAG GCGGTTTCCT TGGCAAGGAT TATAAGTCCA AAGCCGGCCT TCCAGTGATC
AATGTGCCGG GCTGTCCCGC CCATCCCGAC TGGATCACGC AAATCGTCGT GGCGGTGGCA
ACCGGCCGCG CGGGCGATCT GGCGCTCGAT GAATTCCAGC GGCCGAAGAC CTTCTTCACC
TCGTTTACCC AGACCGGCTG CACCCGCAAC ATGCACTTCG CCTACAAGGT TTCGGCGACC
GAATTCGGCC AGCGCAAGGG CTGCCTCTTC TATGACCTTG GGTGCCGAGG GCCGATGACG
CATTCGCCCT GCAATCGCAT CTTGTGGAAT CGTCAATCCT CCAAGACTCG CTCCGGCATG
CCCTGCCTGG GCTGCACCGA GCCGGAGTTT CCCTTCTTTG ACCTCGCCCC GGGCACTGTC
TTCAAAACCC AGACCGTCAT GGGCGTACCG AAGGACATGC CGGCAGGCGT GGACAAGACC
GGTTACATCA AGCTGACGGC CGCCGCCAAA GCAGCCTCAC CGCGGTGGGC TGAAGAAGAC
ATCTTCGTCG TTTGA
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| Protein sequence | MSFLNAEEPS VCDLVTDFGI NVLWHPSLGL ELGENLQKML RALTSGQLPL DIFVFEGTVV
NAPNGTGEWN RFAGRPMRDW VHDLSKVANF VVAIGDCATW GGIPATAPNP SESQGLQFLK
RSQGGFLGKD YKSKAGLPVI NVPGCPAHPD WITQIVVAVA TGRAGDLALD EFQRPKTFFT
SFTQTGCTRN MHFAYKVSAT EFGQRKGCLF YDLGCRGPMT HSPCNRILWN RQSSKTRSGM
PCLGCTEPEF PFFDLAPGTV FKTQTVMGVP KDMPAGVDKT GYIKLTAAAK AASPRWAEED
IFVV
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