| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | B21_02622 |
|---|
| Symbol | csdA |
|---|
| ID | 8113983 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Escherichia coli BL21 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_012892 |
|---|
| Strand | + |
|---|
| Start bp | 2780826 |
|---|
| End bp | 2782031 |
|---|
| Gene Length | 1206 bp |
|---|
| Protein Length | 401 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 56% |
|---|
| IMG OID | 644848820 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | YP_003000393 |
|---|
| Protein GI | 251786089 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG0520] Selenocysteine lyase |
|---|
| TIGRFAM ID | [TIGR01979] cysteine desulfurases, SufS subfamily
[TIGR03392] cysteine desulfurase, catalytic subunit CsdA |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 18 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAACGTTT TTAATCCCGC GCAGTTTCGC GCCCAGTTTC CCGCACTACA GGATGCGGGC
GTCTATCTCG ACAGCGCCGC GACCGCGCTT AAACCTGAAG CCGTGGTTGA AGCCACCCAA
CAGTTTTACA GTCTGAGCGC CGGAAACGTC CATCGCAGCC AGTTTGCCGA AGCCCAACGC
CTGACCGCGC GTTATGAAGC TGCACGAGAG AAAGTGGCGC AATTACTGAA TGCACCGGAT
GATAAAACTA TCGTCTGGAC GCGCGGCACC ACTGAATCCA TCAACATGGT GGCACAATGC
TATGCGCGTC CGCGTCTGCA ACCGGGCGAT GAGATTATTG TCAGCGTGGC AGAACACCAC
GCCAACCTCG TCCCCTGGCT GATGGTCGCC CAACAAACTG GAGCCAAAGT GGTGAAATTG
CCGCTTAATG CGCAGCGACT GCCGGATGTC GATTTGTTGC CAGAACTGAT TACTCCCCGT
AGTCGGATTC TGGCGTTGGG TCAGATGTCG AACGTTACTG GCGGTTGCCC GGATCTGGCG
CGAGCGATTA CCTTTGCTCA TTCAGCCGGG ATGGTGGTGA TGGTTGATGG TGCTCAGGGG
GCAGTGCATT TCCCCGCGGA TGTTCAGCAA CTGGATATTG ATTTCTATGC TTTTTCAGGT
CACAAACTGT ATGGCCCGAC AGGTATCGGC GTGCTGTATG GTAAATCAGA ACTGCTGGAG
GCGATGTCGC CCTGGCTGGG CGGCGGCAAA ATGGTTCACG AAGTGAGTTT TGACGGCTTC
ACGACTCAAT CTGCGCCGTG GAAACTGGAA GCTGGAACGC CAAATGTCGC TGGTGTCATA
GGATTAAGCG CGGCGCTGGA ATGGCTGGCA GATTACGATA TCAACCAGGC CGAAAGCTGG
AGCCGTAGCT TAGCAACGCT GGCGGAAGAT GCGCTGGCGA AACGTCCCGG CTTTCGTTCA
TTCCGCTGCC AGGATTCCAG CCTGCTGGCC TTTGATTTTG CTGGCGTTCA TCATAGCGAT
ATGGTGACGC TGCTGGCGGA GTACGGTATT GCCCTGCGGG CCGGGCAGCA TTGCGCTCAG
CCGCTACTGG CAGAATTAGG CGTAACCGGC ACACTGCGCG CCTCTTTTGC GCCATATAAT
ACAAAGAGTG ATGTGGATGC GCTGGTGAAT GCCGTTGACC GCGCGCTGGA ATTATTGGTG
GATTAA
|
|---|
| Protein sequence | MNVFNPAQFR AQFPALQDAG VYLDSAATAL KPEAVVEATQ QFYSLSAGNV HRSQFAEAQR
LTARYEAARE KVAQLLNAPD DKTIVWTRGT TESINMVAQC YARPRLQPGD EIIVSVAEHH
ANLVPWLMVA QQTGAKVVKL PLNAQRLPDV DLLPELITPR SRILALGQMS NVTGGCPDLA
RAITFAHSAG MVVMVDGAQG AVHFPADVQQ LDIDFYAFSG HKLYGPTGIG VLYGKSELLE
AMSPWLGGGK MVHEVSFDGF TTQSAPWKLE AGTPNVAGVI GLSAALEWLA DYDINQAESW
SRSLATLAED ALAKRPGFRS FRCQDSSLLA FDFAGVHHSD MVTLLAEYGI ALRAGQHCAQ
PLLAELGVTG TLRASFAPYN TKSDVDALVN AVDRALELLV D
|
|---|
| |