Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | B21_01118 |
Symbol | mfd |
ID | 8116018 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Escherichia coli BL21 |
Kingdom | Bacteria |
Replicon accession | NC_012892 |
Strand | - |
Start bp | 1172519 |
End bp | 1175965 |
Gene Length | 3447 bp |
Protein Length | 1148 aa |
Translation table | 11 |
GC content | 55% |
IMG OID | 644847374 |
Product | hypothetical protein |
Protein accession | YP_002998947 |
Protein GI | 251784643 |
COG category | [K] Transcription [L] Replication, recombination and repair |
COG ID | [COG1197] Transcription-repair coupling factor (superfamily II helicase) |
TIGRFAM ID | [TIGR00580] transcription-repair coupling factor (mfd) |
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Plasmid Coverage information |
Num covering plasmid clones | 7 |
Plasmid unclonability p-value | 0.451631 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGCCTGAAC AATATCGTTA TACGCTGCCC GTCAAAGCGG GTGAGCAGCG TCTGCTGGGC GAGTTAACCG GCGCTGCCTG TGCGACGCTG GTAGCGGAAA TTGCCGAACG TCACGCCGGT CCGGTGGTAC TCATTGCACC AGATATGCAA AATGCTCTGC GTTTGCATGA TGAAATCAGC CAGTTTACCG ATCAAATGGT GATGAATCTG GCGGACTGGG AAACTCTTCC CTACGACAGT TTTTCGCCTC ATCAGGACAT TATCTCCTCG CGCCTTTCCA CCCTTTACCA GCTACCGACG ATGCAGCGTG GCGTACTGAT TGTTCCGGTG AATACGCTTA TGCAGCGCGT TTGCCCACAC AGTTTTCTCC ACGGTCATGC GCTGGTGATG AAAAAAGGTC AGCGCCTGTC ACGAGATGCA TTACGAACCC AACTGGACAG CGCAGGTTAT CGCCATGTTG ACCAGGTGAT GGAGCACGGC GAATACGCCA CGCGCGGCGC GTTGCTAGAT CTCTTCCCGA TGGGGAGTGA GCTGCCTTAT CGTCTTGATT TCTTTGATGA TGAAATCGAC AGCCTGCGGG TGTTTGACGT CGACAGCCAG CGCACGCTGG AGGAAGTAGA AGCGATCAAC CTGCTGCCCG CGCACGAATT CCCGACCGAT AAAGCGGCAA TTGAACTGTT CCGCAGCCAG TGGCGCGATA CCTTCGAAGT GAAGCGCGAT CCAGAACATA TTTACCAGCA AGTGAGTAAA GGCACATTGC CTGCCGGGAT CGAGTACTGG CAGCCACTGT TCTTCAGCGA GCCGCTGCCG CCGCTGTTCA GTTATTTCCC TGCCAATACC TTGCTGGTGA ATACTGGCGA TCTGGAAAAC AGTGCCGAAC GTTTCCAGGC TGACACGCTG GCGCGTTTTG AGAATCGCGG CGTCGACCCA ATGCGCCCAC TTTTGCCACC ACAATCGCTC TGGCTGCGGG TGGACGAGCT CTTCTCAGAG CTGAAAAACT GGCCCCGGGT GCAGCTAAAA ACTGAACATT TACCGACAAA AGCAGCGAAT GCCAATTTAG GCTTCGAGAA GCTGCCAGAC CTGGCCGTTC AGGCACAACA AAAAGCGCCG CTGGATGCGC TGCGTAAGTT CCTCGAGTCT TTCGACGGTC CGGTGGTGTT CTCGGTAGAA AGTGAAGGTC GCCGTGAAGC GCTGGGTGAA CTGCTCGCAC GAATTAAAAT TGCTCCGCAA CGCATTATGC GTCTTGATGA AGCCAGCGAC CGTGGGCGTT ATCTGATGAT TGGCGCTGCC GAACATGGTT TTGTCGATAA GGTGCGTAAC CTAGCGCTGA TTTGCGAAAG CGATCTGCTC GGTGAACGTG TTGCCCGCCG TCGTCAGGAT TCTCGCCGCA CCATCAACCC CGATACACTG ATCCGTAACC TTGCGGAGCT GCATATTGGC CAGCCGGTGG TCCATCTGGA GCACGGCGTC GGTCGCTATG CCGGAATGAC CACGCTGGAA GCGGGCGGCA TTACCGGCGA GTACCTGATG CTCACCTATG CCAACGACGC CAAACTGTAT GTTCCGGTGT CGTCACTGCA TCTGATTAGC CGTTACGCAG GTGGCGCGGA AGAAAACGCC CCGCTGCATA AACTTGGCGG TGATGCGTGG TCACGCGCGC GGCAGAAAGC GGCGGAAAAA GTGCGTGATG TGGCGGCGGA ATTGCTGGAT ATCTACGCGC AACGCGCCGC CAAAGAGGGC TTCGCGTTTA AACACGATCG TGAGCAGTAT CAGTTGTTCT GCGACAGCTT CCCGTTTGAA ACCACGCCGG ATCAGGCTCA AGCCATTAAT GCGGTGCTTA GCGACATGTG TCAGCCACTG GCAATGGATC GTCTGGTGTG CGGCGATGTT GGCTTTGGTA AAACAGAAGT GGCAATGCGC GCCGCTTTCC TGGCAGTAGA TAACCACAAG CAGGTAGCGG TGCTGGTGCC TACCACCCTT CTCGCGCAGC AGCATTACGA CAACTTCCGC GACCGTTTCG CCAACTGGCC GGTCCGTATC GAAATGATCT CCCGTTTCCG CAGCGCCAAA GAGCAGACGC AAATCCTTGC GGAAGTGGCG GAAGGGAAAA TCGATATTCT GATCGGTACG CACAAACTGC TGCAAAGTGA CGTCAAGTTT AAAGATTTAG GCCTGCTGAT TGTCGATGAA GAACACCGCT TCGGGGTGCG TCATAAAGAG CGCATTAAAG CGATGCGCGC GAACGTGGAT ATTCTGACGC TTACTGCAAC GCCGATCCCA CGTACGCTGA ATATGGCAAT GAGCGGAATG CGTGACCTGT CGATTATCGC CACGCCGCCC GCCCGTCGTC TGGCAGTTAA AACCTTTGTC CGTGAGTATG ACAGCCTGGT GGTCCGGGAG GCGATCCTGC GTGAAATTTT GCGCGGAGGA CAGGTTTATT ATCTCTACAA TGATGTGGAA AACATTCAGA AAGCCGCCGA ACGGCTGGCA GAACTGGTGC CAGAAGCGCG GATCGCCATC GGTCACGGGC AGATGCGCGA GCGCGAACTG GAACGGGTGA TGAATGATTT CCATCATCAA CGTTTCAACG TGCTGGTTTG TACCACCATT ATCGAAACCG GGATCGACAT CCCGACAGCC AACACCATTA TCATTGAACG GGCGGATCAC TTCGGTCTGG CGCAGCTGCA CCAGTTACGC GGTCGCGTCG GACGTTCGCA TCATCAGGCA TATGCATGGT TGCTGACACC GCATCCAAAA GCGATGACTA CCGATGCACA AAAACGTCTT GAAGCGATTG CCTCGCTGGA AGATCTCGGG GCAGGTTTTG CGCTGGCAAC GCACGATCTG GAGATTCGCG GCGCGGGTGA ACTGCTTGGC GAAGAACAAA GCGGCTCAAT GGAAACCATC GGTTTCTCGC TGTATATGGA GTTGCTGGAA AACGCCGTCG ATGCACTGAA AGCCGGACGC GAGCCGTCGC TGGAAGATCT CACCAGCCAT CAAACAGAAG TCGAGCTGCG GATGCCGTCG CTATTGCCAG ATGATTTCAT CCCTGACGTG AACACGCGTC TGTCGTTCTA CAAACGTATT GCCAGCGCCA AAACGGAAAA CGAACTGGAA GAGATCAAAG TCGAGCTTAT CGATCGCTTC GGCCTGCTGC CGGATCCGGC GCGTACCCTG CTGGATATTG CCCGTCTGCG CCAGCAAGCG CAGAAACTGG GGATCAGGAA GCTGGAAGGT AATGAGAAAG GCGGGGTGAT CGAATTTGCC GAGAAGAATC ACGTTAATCC GGCCTGGTTG ATTGGTTTGC TGCAAAAACA GCCGCAGCAT TACCGCCTTG ATGGTCCGAC GCGCCTGAAA TTTATTCAGG ATTTGAGTGA GCGGAAAACG CGTATCGAAT GGGTACGCCA GTTTATGCGT GAACTGGAAG AGAACGCGAT CGCTTAA
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Protein sequence | MPEQYRYTLP VKAGEQRLLG ELTGAACATL VAEIAERHAG PVVLIAPDMQ NALRLHDEIS QFTDQMVMNL ADWETLPYDS FSPHQDIISS RLSTLYQLPT MQRGVLIVPV NTLMQRVCPH SFLHGHALVM KKGQRLSRDA LRTQLDSAGY RHVDQVMEHG EYATRGALLD LFPMGSELPY RLDFFDDEID SLRVFDVDSQ RTLEEVEAIN LLPAHEFPTD KAAIELFRSQ WRDTFEVKRD PEHIYQQVSK GTLPAGIEYW QPLFFSEPLP PLFSYFPANT LLVNTGDLEN SAERFQADTL ARFENRGVDP MRPLLPPQSL WLRVDELFSE LKNWPRVQLK TEHLPTKAAN ANLGFEKLPD LAVQAQQKAP LDALRKFLES FDGPVVFSVE SEGRREALGE LLARIKIAPQ RIMRLDEASD RGRYLMIGAA EHGFVDKVRN LALICESDLL GERVARRRQD SRRTINPDTL IRNLAELHIG QPVVHLEHGV GRYAGMTTLE AGGITGEYLM LTYANDAKLY VPVSSLHLIS RYAGGAEENA PLHKLGGDAW SRARQKAAEK VRDVAAELLD IYAQRAAKEG FAFKHDREQY QLFCDSFPFE TTPDQAQAIN AVLSDMCQPL AMDRLVCGDV GFGKTEVAMR AAFLAVDNHK QVAVLVPTTL LAQQHYDNFR DRFANWPVRI EMISRFRSAK EQTQILAEVA EGKIDILIGT HKLLQSDVKF KDLGLLIVDE EHRFGVRHKE RIKAMRANVD ILTLTATPIP RTLNMAMSGM RDLSIIATPP ARRLAVKTFV REYDSLVVRE AILREILRGG QVYYLYNDVE NIQKAAERLA ELVPEARIAI GHGQMREREL ERVMNDFHHQ RFNVLVCTTI IETGIDIPTA NTIIIERADH FGLAQLHQLR GRVGRSHHQA YAWLLTPHPK AMTTDAQKRL EAIASLEDLG AGFALATHDL EIRGAGELLG EEQSGSMETI GFSLYMELLE NAVDALKAGR EPSLEDLTSH QTEVELRMPS LLPDDFIPDV NTRLSFYKRI ASAKTENELE EIKVELIDRF GLLPDPARTL LDIARLRQQA QKLGIRKLEG NEKGGVIEFA EKNHVNPAWL IGLLQKQPQH YRLDGPTRLK FIQDLSERKT RIEWVRQFMR ELEENAIA
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