Gene Avin_45300 details

Gene Information

• Locus tag: Avin_45300
• Symbol: pilM
• ID: 7763398
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Azotobacter vinelandii DJ
• Kingdom: Bacteria
• Replicon accession: NC_012560
• Strand: -
• Start bp: 4595339
• End bp: 4596421
• Gene Length: 1083 bp
• Protein Length: 360 aa
• Translation table: 11
• GC content: 64%
• IMG OID: 643807378
• Product: Type IV pilus assembly protein
• Protein accession: YP_002801619
• Protein GI: 226946546
• COG category: [N] Cell motility; [U] Intracellular trafficking, secretion, and vesicular transport
• COG ID: [COG4972] Tfp pilus assembly protein, ATPase PilM
• TIGRFAM ID: [TIGR01175] type IV pilus assembly protein PilM

Plasmid Coverage information

• Num covering plasmid clones: 23
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGCCAAGGA AATTTGTTGT GCTAAGGCTC TTCAACAAGC AGGCGGGTTC ATTGCTGGGA 
ATCGATATCG GTTCGACCAT GGTCAAACTT CTCGAATTGA GTCGTTCGGG GGGCGGCTAT 
CGGGTCGAGG CCTATGCTGT CGAACCGCTG CCGGCCAATG CCGTCGTCGA GAAGAATATC 
GTCGATATCG ATGGTGTCGG TCAGGCCTTG GGCAAGGTGC TGGCCAGGAT CGGGACCGGA 
GCCCGGCGTG CCGCGGTGGC CGTGGCCGGT TCCGTGGTGA TCACCAAGGT CATGGAGATG 
GATGCCGGGC TTTCCGAAGA GGAAATGGAA ACCCAGTTGA CGCTCGAGGC CGAACAATAC 
ATTCCCTACC CCCTCGAGGA GGTGGCGATC GATTTCGAGG TCCTGGGGCC GCTGTCGCGC 
AGTCCGGGCC GGGTCGAAGT GCTGCTCGTC GCTTGCCGCA GGGAGAGCGT CGAGGCCCGC 
GAGGCGGTGC TGGCGCTGGC AGGCCTGACA GCCGGGGTCG TCGATATCGA GGCCTATGCC 
ATGGAGCGTG TCTGCGGGCT GCTGATCGAT CGGTTGGGGG GCGACCCGTC GGAGTTGACC 
GTGGCCGTCG TCGATATCGG CGCGACCATG ATGACGCTCA GCGTGTTGCA TGATGGACGC 
ATCCTCTATA CCCGCGAGCA ATCGTTCGGC GGCAAGCAGC TCACCGACGA GATCCAGCGC 
CGTTACGGAC TGTCCGTGGC CGAAGCCGGC TTGGCCCGGC AAAAGGGTGG ACTCCCGGCC 
GACTGCGACA GCGTGGTCCT GCAACCTTTC AAGGAGGCCG TCGTACAGCA GATATCCCGC 
TCGCTGCAGT TCTTCTTCGC GGCGGGCCGG TACGACCAGG TCGACTGCAT CCTGCTGGCC 
GGCGGGACCT CCTCCCTGCC GGGCCTCGAC CAACTGGTCC AGCAGAAGAT CGGCACCAGG 
ACCCTGGTGG CCAATCCGTT CGCCGGGATG ACGCTGAGCC CCAAGGTGAA TGCCGCGGCC 
TTGGCCAGCG ACGCTCCGGC CATGATGGTC GCCTGCGGCC TGGCGATGAG GCGCTTCGAT 
TAG 

 

Protein sequence

MPRKFVVLRL FNKQAGSLLG IDIGSTMVKL LELSRSGGGY RVEAYAVEPL PANAVVEKNI 
VDIDGVGQAL GKVLARIGTG ARRAAVAVAG SVVITKVMEM DAGLSEEEME TQLTLEAEQY 
IPYPLEEVAI DFEVLGPLSR SPGRVEVLLV ACRRESVEAR EAVLALAGLT AGVVDIEAYA 
MERVCGLLID RLGGDPSELT VAVVDIGATM MTLSVLHDGR ILYTREQSFG GKQLTDEIQR 
RYGLSVAEAG LARQKGGLPA DCDSVVLQPF KEAVVQQISR SLQFFFAAGR YDQVDCILLA 
GGTSSLPGLD QLVQQKIGTR TLVANPFAGM TLSPKVNAAA LASDAPAMMV ACGLAMRRFD