Gene Avin_42350 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagAvin_42350 
Symbol 
ID7763111 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameAzotobacter vinelandii DJ 
KingdomBacteria 
Replicon accessionNC_012560 
Strand- 
Start bp4262514 
End bp4263167 
Gene Length654 bp 
Protein Length217 aa 
Translation table11 
GC content65% 
IMG OID643807086 
ProductIsochorismatase hydrolase 
Protein accessionYP_002801334 
Protein GI226946261 
COG category[Q] Secondary metabolites biosynthesis, transport and catabolism 
COG ID[COG1335] Amidases related to nicotinamidase 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones23 
Plasmid unclonability p-value1 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGACTACCG CGAAAGCCGT TCCCGGTCGG ACTTTGCTGG ACCCGGCCAA CCACACCCTG 
ATCATGATCG ACCACCAGTC GCAGATGTCC TTCGCCACCA AGTCGATCGA TGCGGTGTCG 
CTGCGCAACA ACGTCGCCCT GGTGGCCAAG GCCGCCAGGG AGTTCAAGGT TCCCGCCATC 
CTGACGACGG TGGCGGAAAA GAGCTTCTCG GGCCCCATCT TCGACGAGAT CCGCTCCGTG 
TTCCCCGAGC ACAGGGTGAT CGACCGGACC ACCATGAACA CCTGGGAGGA CGAGCGGATC 
GCGGTCGAGG TCAACCGGGC CGGCAAGGAC AAGATCGTCT TCGCCGGCCT GTGGACCTCG 
GTGTGCATCG TCGGTCCGGT GCTGTCCGCC CTGGACCAGG GCTTCGAGGC CTACGTGATC 
GCCGATGCCT GCGGCGATGT CTCGGACGAG GCCCACGAAC GCGCCATGCA GCGCATGATC 
CAGCAGGGGG CCCGGCCGAT GACCGCCCTC CAGTACCTGC TCGAACTGCA GCGCGACTGG 
GCGCGCGGCG AGACCTACGA CGAAACGGTG CGGACCTCCA TCGCCCACGG CGGCGCCTAT 
GGCTTGGGGC TGATCTACGC CAAGACCATG TTCAACGCCT CGGAAGGCCA CTGA
 
Protein sequence
MTTAKAVPGR TLLDPANHTL IMIDHQSQMS FATKSIDAVS LRNNVALVAK AAREFKVPAI 
LTTVAEKSFS GPIFDEIRSV FPEHRVIDRT TMNTWEDERI AVEVNRAGKD KIVFAGLWTS 
VCIVGPVLSA LDQGFEAYVI ADACGDVSDE AHERAMQRMI QQGARPMTAL QYLLELQRDW 
ARGETYDETV RTSIAHGGAY GLGLIYAKTM FNASEGH