| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Avin_30810 |
|---|
| Symbol | lapR |
|---|
| ID | 7761981 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Azotobacter vinelandii DJ |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_012560 |
|---|
| Strand | - |
|---|
| Start bp | 3185921 |
|---|
| End bp | 3187615 |
|---|
| Gene Length | 1695 bp |
|---|
| Protein Length | 564 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 69% |
|---|
| IMG OID | 643805956 |
|---|
| Product | sigma54-dependent activator protein |
|---|
| Protein accession | YP_002800220 |
|---|
| Protein GI | 226945147 |
|---|
| COG category | [K] Transcription
[T] Signal transduction mechanisms |
|---|
| COG ID | [COG3829] Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 21 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGCAGTAC AACGGCTGAT CGAGCGTTTC AACCTGCGTT CGAGGCTGCG TTTCGACATC
GACGCCGGGC AGATCTGGCT GGACGAGAGC CGCATGCTCC TGTTCCACGC CAAGGCCGTC
GGCGCCCTGC GCCGCGAGCT GTTCGACTCG CTCGGCGCCA AGCGGGCCCA GGGCTTGCTG
TTCCGCATGG GCTTCGCCGC CGGCCAGCAG GATGCCGACC TGGCTTCCAA GCTGCTGGGC
GAGGGCGACA ACTACGACGT GTTCCAGATC GGCCCCGAAC TGCACGCCTT CGAAGGGCTG
GTCAAGACGG TGCTCATGGA TGCGCACATC GACTGGGAGC AGGGCTGTTT CTTCGGCGAG
GCGAAGTGCG AGAACTCCTG GGAGGCCGAA TCCCATCTCC AGCAATTCGG CATAGGCGAA
GACACCGCCT GCTGGACCCT GGCCGGCTAC GCCTCCGGTT ACGTCACCCG TTTCTTCCGG
CGCTTCATCG TCTTCCGCGA AACCCAGTGC ACCTGCCGGG GCGATCCCCA TTGCGTCCTG
GTCGGCAAGC CGGTCGAGGC CTGGGGCGAC GACGCCTATC TGGAATATTG CCGCCCGCAG
GACCTGGAGC CCTCGCTCCG GGAACTGCAG CGAGAGCTGT GGCAACTGCG CGGCGGCCAG
CGCGAACAGC ACGCCCCCGG CCGGCTGGTC GGCGCCTCGC CGGGGTTTCG CACGGCCTTC
GATCTGCTCG GCAAGGCGGC CAGGACGCCG ATCACGGTGC TGCTGCTGGG CGAAACCGGC
GTCGGCAAGG AGGTCTTCGC CCGCTGGCTG CACGAGAACA GCGAGCGCGC CGAGCAACCG
TTCGTGGCGG TCAATTGCGC AGCCATCCCC AACGACCTGA TCGAGTCGGA ACTCTTCGGC
GTGCAGAAAG GCGCCTTCAC CGGCGCGCAG CAGTCGCGTC CCGGCCGCTT CGAGCGCGCC
GATGGCGGCA CCCTGTTCCT CGACGAGCTG GGCGATCTCT CGTCCTCCGC CCAAGTGAAG
CTGCTGCGCG TGCTGCAGAC CGGCGAAGTC GAGCGGCTGG GCGACGACAA GGCGCGCAAG
GTCGATGTGC GTCTGGTGGC GGCGACCAAC GTCGACCTGC AACGGGCGAT GGCCGAGGGG
CGTTTTCGCG CCGACCTGTA CTACCGGCTG GCCACCTATC CGGTGACCAT TCCGCCGCTG
CGCGAGCGCA AGTCGGACAT CCCGCTGCTG GTCGCGGCGC TGCTGGAGAA GTACGCGCCC
ATCTACCACA AGAAGCTGCC GGGCCTGACC GACCGCGCCA TGCAGGCATT GATGGCCCAC
CGATGGCCGG GCAACGTGCG CGAGCTGGAA AACCTGATCG AACGGGCCGT GCTGCTGGTG
CCCTCGGGGA CGCGGATCGA GGTCGAGCAC CTGTTCGCCG GCTGCCTGCC GGCGCCGCCC
TGCGGTGCCG CCGTCGACCG CCAGGGCCTG GTGGGCAATG CCGACGAGGC CCGTCGCGAA
CTGCTCTACG ACAGCCTGCT CGACGACGGC TTCGACCTGC AGGCGCACGA AGCCCGCCTG
CTCGAGCTGG CGGTGCGCCG CGCCAAGGGC AACCTGACTC ACGCCGCGCG CCTGCTCGGC
ATCACCCGCC GGCAACTGGC CTATCGCCTG AAGCAGGCCA GCGGCGAAAA CCGGCCGAGC
CCGGAGCGGA CCTGA
|
|---|
| Protein sequence | MAVQRLIERF NLRSRLRFDI DAGQIWLDES RMLLFHAKAV GALRRELFDS LGAKRAQGLL
FRMGFAAGQQ DADLASKLLG EGDNYDVFQI GPELHAFEGL VKTVLMDAHI DWEQGCFFGE
AKCENSWEAE SHLQQFGIGE DTACWTLAGY ASGYVTRFFR RFIVFRETQC TCRGDPHCVL
VGKPVEAWGD DAYLEYCRPQ DLEPSLRELQ RELWQLRGGQ REQHAPGRLV GASPGFRTAF
DLLGKAARTP ITVLLLGETG VGKEVFARWL HENSERAEQP FVAVNCAAIP NDLIESELFG
VQKGAFTGAQ QSRPGRFERA DGGTLFLDEL GDLSSSAQVK LLRVLQTGEV ERLGDDKARK
VDVRLVAATN VDLQRAMAEG RFRADLYYRL ATYPVTIPPL RERKSDIPLL VAALLEKYAP
IYHKKLPGLT DRAMQALMAH RWPGNVRELE NLIERAVLLV PSGTRIEVEH LFAGCLPAPP
CGAAVDRQGL VGNADEARRE LLYDSLLDDG FDLQAHEARL LELAVRRAKG NLTHAARLLG
ITRRQLAYRL KQASGENRPS PERT
|
|---|
| |