Gene Avin_30400 details

Gene Information

• Locus tag: Avin_30400
• Symbol: ccmF
• ID: 7761940
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Azotobacter vinelandii DJ
• Kingdom: Bacteria
• Replicon accession: NC_012560
• Strand: -
• Start bp: 3150753
• End bp: 3152726
• Gene Length: 1974 bp
• Protein Length: 657 aa
• Translation table: 11
• GC content: 68%
• IMG OID: 643805912
• Product: cytochrome c-type biogenesis protein CcmF
• Protein accession: YP_002800180
• Protein GI: 226945107
• COG category: [O] Posttranslational modification, protein turnover, chaperones
• COG ID: [COG1138] Cytochrome c biogenesis factor
• TIGRFAM ID: [TIGR00353] c-type cytochrome biogenesis protein CcmF

Plasmid Coverage information

• Num covering plasmid clones: 8
• Plasmid unclonability p-value: 0.288355
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGATTCCCG AACTCGGCCA CCTGGGGATG ATCCTCGCCC TGTGCCTGGC GCTGGTGCAG 
GGCACCTTGC CGCTGATCGG CGCCTGGCGT GGCGACCGCC TGTGGATGGG CCTGGCCGTG 
CCGGCCGCCT GGGGGCAGTT CGCTTTCCTG TCGTTCGCCT TCGTCTGTCT GACCCAGGCT 
TTCCTGGTCG ACGACTTCTC GGTCGCCTAC GTGGCCGGCA ACTCCAACAG CGCCTTGCCC 
TGGTACTACA AGCTGAGCGC CGTGTGGGGC GCCCACGAAG GATCGCTGCT GCTCTGGGCG 
CTGATCCTCT CCGGCTGGAC CTTCGCGGTG TCGGTCTTTT CCCGGCAACT GCCCGAGGAG 
ATGCTGGCCC GCGTGCTGGG CGTGATGGGG CTGATCAGCG TCGGCTTCCT GCTGTTTCTG 
ATCGTCACCT CCAACCCCTT CGCCCGCCTG TTGCCGCAGA CGCCGGTCGA TGGCCGCGAC 
CTCAACCCGC TGTTGCAGGA CTTCGGCCTG ATCGTCCATC CGCCGATGCT CTACATGGGT 
TACGTCGGCT TCTCAGTGGC CTTCGCCTTC GCCATCGCCG CGCTGCTCGG CGGGCGCCTC 
GATGCCGCCT GGGCGCGCTG GTCGCGGCCC TGGACGCTGG TCGCCTGGGC CTTTCTCGGT 
ATCGGCATCG TGCTCGGCTC CTGGTGGGCC TATTACGAGC TGGGCTGGGG CGGCTGGTGG 
TTCTGGGACC CGGTGGAGAA CGCTTCCTTC ATGCCCTGGC TGCTGGGCAC CGCACTGTTG 
CACTCGCTGG CGGTGACGGA GAAGCGCGGG GTGTTCAAGA GCTGGACGGT GCTTCTGGCC 
ATCGCCGCCT TCTCGCTGAG CCTGCTCGGC ACCTTCCTGG TGCGTTCCGG GGTGCTGACT 
TCGGTGCATG CCTTCGCCAA CGATCCGGAG CGCGGCGTGT TCATCCTGAT CTTCCTGCTG 
GTGGTGGTCG GCAGTTCGCT GACCCTGTTC GCCATCCGCG CGCCGGTGGT CAGGAGCCAG 
GTGGGCTTCG CCCTCCGCTC GCGGGAAACC CTGCTGCTGG TGAACAACCT GCTGCTGGTG 
GTGGCGACCT CGACCATCCT GCTCGGCACG CTCTATCCGC TACTGCTGGA TGCGCTGTCC 
GGCGCCAAGC TGTCGGTCGG GCCGCCGTAC TTCAATGCGC TGTTCCTGCC GCTGATGGGG 
CTGCTGATGC TGACGCTGGC GGTCGGCGTG CTGGTGCGCT GGAAGGACAC GCCGCTGCGC 
TGGCTGTCCG GCATGCTCGC GCCGGTACTG CTGGCCAGCG TGGCGCTGGC CCTGCTGGCC 
GCCTTCGTGC TCGGCGATTT CGCCTGGGCG GTGCTGGCGA CCGCTTTCCT GGCGGCCTGG 
GTGGTTCTCG CCGGGGCGCG CGACCTGCTC GACAAGACCC GCCACAAGGG ACTGCTCAAG 
GGCCTGCACG CGCTTTCGCC GAGCTACTGG GGCATGCAAC TGTCCCACCT GGGGATCGCC 
GTCTGCGCCC TGGGCATCGT CCTGAGCAGC CAGGAAAGCG CCGAGCGCGA CCTGCGCATG 
GCGCCGGGCG ATGCCGTGGA ACTGGGCGGC TACCGCTTCG TCTTCGAGGG CACCCGCCAC 
CATGAGGGGC CCAACTTCGT CGCCGACCGG GCCAGCGTCC GCGTCTTCGA CGGCGACGAC 
GAGGTGGCCG TGCTGCACCC GGAGAAGCGT CTCTATACCG TGCAGCGGAT GCCGATGACC 
GAGGCCGGCA TCGACGCAGG TTTCACCCGC GACTTCTACG TCGCCCTGGG CGAGCCGCTG 
GAAAACGGCG CCTGGGCGGT CCGCCTGCAT ATCAAGCCGT TCGTCCGCTG GATCTGGCTG 
GGGGGCCTGA TGATGGCTTT CGGCGCGGCG CTGGCGGCCT GCGACCGGCG TTATCGGGTC 
AAGGTCAGGG CCCGCGTGCG CGAGGCTCTG GGCCTGGCCG GACAAGGAGC CTGA 

 

Protein sequence

MIPELGHLGM ILALCLALVQ GTLPLIGAWR GDRLWMGLAV PAAWGQFAFL SFAFVCLTQA 
FLVDDFSVAY VAGNSNSALP WYYKLSAVWG AHEGSLLLWA LILSGWTFAV SVFSRQLPEE 
MLARVLGVMG LISVGFLLFL IVTSNPFARL LPQTPVDGRD LNPLLQDFGL IVHPPMLYMG 
YVGFSVAFAF AIAALLGGRL DAAWARWSRP WTLVAWAFLG IGIVLGSWWA YYELGWGGWW 
FWDPVENASF MPWLLGTALL HSLAVTEKRG VFKSWTVLLA IAAFSLSLLG TFLVRSGVLT 
SVHAFANDPE RGVFILIFLL VVVGSSLTLF AIRAPVVRSQ VGFALRSRET LLLVNNLLLV 
VATSTILLGT LYPLLLDALS GAKLSVGPPY FNALFLPLMG LLMLTLAVGV LVRWKDTPLR 
WLSGMLAPVL LASVALALLA AFVLGDFAWA VLATAFLAAW VVLAGARDLL DKTRHKGLLK 
GLHALSPSYW GMQLSHLGIA VCALGIVLSS QESAERDLRM APGDAVELGG YRFVFEGTRH 
HEGPNFVADR ASVRVFDGDD EVAVLHPEKR LYTVQRMPMT EAGIDAGFTR DFYVALGEPL 
ENGAWAVRLH IKPFVRWIWL GGLMMAFGAA LAACDRRYRV KVRARVREAL GLAGQGA