| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Avin_29670 |
|---|
| Symbol | |
|---|
| ID | 7761868 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Azotobacter vinelandii DJ |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_012560 |
|---|
| Strand | + |
|---|
| Start bp | 3066533 |
|---|
| End bp | 3067552 |
|---|
| Gene Length | 1020 bp |
|---|
| Protein Length | 339 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 66% |
|---|
| IMG OID | 643805840 |
|---|
| Product | oligopeptide ABC transporter, inner membrane permease component |
|---|
| Protein accession | YP_002800108 |
|---|
| Protein GI | 226945035 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG4239] ABC-type uncharacterized transport system, permease component |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 12 |
|---|
| Plasmid unclonability p-value | 0.175174 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAAACTGA CTCCCCTCAA CCGGCGCCGG CTGGAACTCT TCAAGGCGCA CCGGCGCGGC
TGGTGGTCGC TCTGGCTGTT CCTCGCGCTG TTCGCCGCAA GCCTCGGCGC CGAACTGATC
GCCAACGACA AGCCGCTGCT GGTGCGCTAC GACGGCGACT GGTATTTCCC GGTGTTCAAG
CGCTATCCGG AGACCACCTT CGGCGGCGAG TTCCCGCTGA CCACCAACTA CAAGACCCCC
TACATCCGGG ACCTGATCGA AGAGAAGGAT GGCTGGATGC TCTGGCCGCC GATCCCTTTC
AGCTATTCGA GCATCAACTA CGAACTGACC GTCCCGACAC CGGCGCCACC GTCGCAGGTC
AACTGGCTGG GTACCGACGA CCAGGGCCGC GACGTGCTCG CCCGGGTCAT CTACGGCTTC
CGCATCTCGG TGCTGTTCGC CATCACCCTG ACCCTGCTCA GTTCGCTCGT CGGCGTCGTC
GTCGGCGCCT TGCAGGGCTT CCACGGCGGC TGGGTCGATC TGCTCGGCCA GCGTTTCCTG
GAGATCTGGT CCGGCCTGCC GGTGCTCTAC CTGCTGATCA TCCTGGCCAG CTTCGTCCAG
CCCAACTTCT GGTGGCTGCT GGGCATCATG CTGCTGTTCT CCTGGATGAG CCTGGTCGAC
GTGGTGCGCG CCGAGTTCCT GCGCGGCCGC AACCTGGAGT ACGTACGCGC GGCCCGTGCC
CTGGGCATGA GCAACGGCGC CATCATGTAC CGGCACATCC TGCCCAACGC CATGGTCTCG
ACCATGACCT TCATGCCCTT CATCCTCACC GGCGCCATCG GCACCCTCAC CGCCCTGGAC
TTCCTCGGCT TCGGCCTGCC GCCCGGCGCG CCGTCCCTCG GCGAACTGGT CGCCCAGGGC
AAGGCCAACC TGCAGTCGCC CTGGCTGGGG ATCACCGCCT TCGTGGTGCT GGCGCTGATG
CTCAGCCTGC TGGTGTTCAT CGGCGAGGCG GCGCGCGATG CCTTCGACCC GAGGAAGTGA
|
|---|
| Protein sequence | MKLTPLNRRR LELFKAHRRG WWSLWLFLAL FAASLGAELI ANDKPLLVRY DGDWYFPVFK
RYPETTFGGE FPLTTNYKTP YIRDLIEEKD GWMLWPPIPF SYSSINYELT VPTPAPPSQV
NWLGTDDQGR DVLARVIYGF RISVLFAITL TLLSSLVGVV VGALQGFHGG WVDLLGQRFL
EIWSGLPVLY LLIILASFVQ PNFWWLLGIM LLFSWMSLVD VVRAEFLRGR NLEYVRAARA
LGMSNGAIMY RHILPNAMVS TMTFMPFILT GAIGTLTALD FLGFGLPPGA PSLGELVAQG
KANLQSPWLG ITAFVVLALM LSLLVFIGEA ARDAFDPRK
|
|---|
| |