Gene Avin_17220 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagAvin_17220 
Symbol 
ID7760657 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameAzotobacter vinelandii DJ 
KingdomBacteria 
Replicon accessionNC_012560 
Strand+ 
Start bp1706361 
End bp1706978 
Gene Length618 bp 
Protein Length205 aa 
Translation table11 
GC content71% 
IMG OID643804621 
ProductCRISPR-associated protein, CT1974 
Protein accessionYP_002798910 
Protein GI226943837 
COG category 
COG ID 
TIGRFAM ID[TIGR01907] CRISPR system CASCADE complex protein CasE/Cse3 


Plasmid Coverage information

Num covering plasmid clones26 
Plasmid unclonability p-value1 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGTACCTGA CCCGATTGAC CCTTGACCCC CGCAGCGCCC AGGCGCGCCG CGACCTGGCC 
GACGCCTACG ACATGCACCG TACCTTGGTG CGCGCCTTCG TGCGGGACGA ACGGGATGCG 
CCCGGCCGCT TCCTCTGGCG TCTGGAGCCG GGAGCGGATG CCTGGGCCAG TCCGACGCTT 
CTGGTGCAGT CCTGCGAATC CGGCGACTGG GATGTTCTGC AGGGCTTGCC GGGCTATCTG 
CAAAGACCCG CCGAATGCAA GGCCCTGGAT CTCGAGGCGC TCATCCGGCC GCAATGGCGG 
TACCGCTTCC GTCTCCTGGC CAACCCCACG GTGACCCGCG CCGGCAAGCG TCGCGGCTTG 
CTGGGGGAGG CCGAGCAACT GGCCTGGCTG CAGCGCCAGG GCGAGCGGCA CGGCTTCGCG 
GTGAAGGCCG TGCTGGTCAG CGCCAGCGAC CTGCTCGACA GCCGGCGCAA GGGCGGCGCG 
CCGATCGTGC TGCAGCGGGT CTGCTTCGAA GGGCTGCTGC AGGTGGTCGA GGCCGACGCG 
CTGCGCCGGG CCCTGGCCAG CGGCATCGGA CCGGCCAAGG CGTTCGGTTG CGGCCTGCTC 
AGCGTGGCGC GCTGCTGA
 
Protein sequence
MYLTRLTLDP RSAQARRDLA DAYDMHRTLV RAFVRDERDA PGRFLWRLEP GADAWASPTL 
LVQSCESGDW DVLQGLPGYL QRPAECKALD LEALIRPQWR YRFRLLANPT VTRAGKRRGL 
LGEAEQLAWL QRQGERHGFA VKAVLVSASD LLDSRRKGGA PIVLQRVCFE GLLQVVEADA 
LRRALASGIG PAKAFGCGLL SVARC