| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Avin_13340 |
|---|
| Symbol | secA |
|---|
| ID | 7760276 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Azotobacter vinelandii DJ |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_012560 |
|---|
| Strand | + |
|---|
| Start bp | 1297593 |
|---|
| End bp | 1300340 |
|---|
| Gene Length | 2748 bp |
|---|
| Protein Length | 915 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 63% |
|---|
| IMG OID | 643804236 |
|---|
| Product | preprotein translocase subunit SecA |
|---|
| Protein accession | YP_002798535 |
|---|
| Protein GI | 226943462 |
|---|
| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG0653] Preprotein translocase subunit SecA (ATPase, RNA helicase) |
|---|
| TIGRFAM ID | [TIGR00963] preprotein translocase, SecA subunit |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 11 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGTTTGCGC CTTTGTTGAG AGTGCTCTTT GGGAGCAAGA ACGATCGTGA AGTCAAGCGC
ATGCGTCGAG CCGTGCGGGC GATCAATGCC CTCGAAGAGC AGATGGTGGC GCTGACGGAC
GAACAGTTGC GCGCCAAGAC CGAGGAGTTC AGAGGCCGTC TCGGCAAGGG CGAAACCCTT
GACCAACTGC TGCCCGAAGC CTTCGCCGTT GCCCGGGAGG CAGGCAAGCG GGTAATGGGC
ATGCGCCACT TCGATGTGCA ATTGATCGGC GGGATGGTTC TGCACGAGGG CAAGATCGCC
GAGATGCGTA CCGGCGAGGG CAAGACTCTG GTGGCGACCC TGGCCGTCTA TCTCAATGCC
CTGGCTGGCA AGGGTGTGCA CGTGGTGACG GTGAACGACT ACCTGGCCCG TCGCGATGCC
AACTGGATGC GCCCGTTGTA CGAGTTCCTG GGGCTTTCCG TCGGCGTGGT CACGCCCTTC
CAGCCGCCGG AGGAGAAGCG GGCCGCCTAT GCTGCCGATA TTACCTACGG CACCAACAAC
GAGTTCGGCT TCGACTACCT GCGCGACAAC ATGGCCTTCA GTCTGGAGGA TAAGTTTCAG
CGCGAACTCA ACTATGCGGT GATCGACGAG GTCGATTCCA TATTGATCGA CGAGGCGCGT
ACGCCGTTGA TCATTTCCGG CCAGGCCGAG GACAGCTCGC AGTTGTACCT GCAGATCAAT
GCCCTGATTC CGCGATTGAA GCGTCACATC GAGGAAGAGG AGGGCGTGGT CACCCAGGAA
GGCCACTACG TCGTCGACGA AAAGACCCGG CAGATCGAGC TGAACGAGCA GGGCCACCAG
TTCATCGAGG AACTGCTGGC CAGTGCCGGC CTGCTGCCCG AGGGCGACAA CCTCTACTCC
GCCCATAATC TGCAACTGCT GACCCACGTC TACGCCGGGT TGCGCGCGCA TGTGCTGTTC
CATCGCAACG TCGAATACAT CGTGCAGGGC AACCAGGTGC TGCTGATCGA CGAGCACACC
GGGCGGACCA TGCAGGGCCG GCGCCTTTCC GAGGGGCTGC ACCAGGCCAT CGAGGCCAAG
GAGGGGCTGC CGATCCAGGC GGAGAGCCAG ACCCTGGCCT CGACCACCTT CCAGAACTAT
TTCCGTCTCT ATCACAAGCT GGCCGGCATG ACCGGCACCG CCGACACCGA AGCCTTCGAG
TTCCGCCAGA TCTACGGCCT CGACGTGGTG GTGATCCCGA CCCACCGGCC GATCGCACGC
AAGGACTTCA ACGATCTGGT CTACCTGACC CAGGAAGAGA AGTACGCGGC GATCATCGGC
GACATCAAGG AATGCCAGAC CCAGGGACGT CCGGTGTTGG TGGGGACCGC CTCCATCGAA
AGCTCCGAAT ACGTTTCCCA ACTGCTGAAG AAGGAAGGCA TCGCGCATCA GGTGCTCAAT
GCCAAGTACC ACGAGAAGGA GGCCGAGATC ATCGCCCAGG CCGGGCGCCC CGGCGCGGTG
ACCATCGCCA CCAACATGGC CGGCCGGGGT ACCGACATCC TGCTCGGCGG CAACTGGGAG
GTCGAGGTCG CCGCCCTCGA AAACCCGACC GATGAGCCGG TCGCACAGAT CAAGGCCGAC
TGGCAAAAGC GCCACCAGCA GGTGATCGAG GCCGGTGGCC TGCACGTGAT CGCTTCGGAG
CGCCACGAAT CCCGGCGTAT CGACAACCAG TTGCGCGGCC GGGCCGGCCG CCAGGGCGAT
CCGGGCTCCA GCCGTTTCTA CCTGTCTCTG GAAGATAACC TGATGCGCAT CTTCGCCTCC
GACCGGGTGA AGAACTTCAT GAAGGCGCTT GGCATGCAGG CTGGCGAGGC CATCGAGCAT
CGCATGGTGA CCAATGCCAT CGAGAAGGCC CAACGCAAGG TCGAGGGGCG CAACTTCGAC
ATGCGCAAGC AGTTGCTCGA ATTCGACGAC GTGGCCAACG AGCAGCGCAA GGTGATCTAC
CACATGCGCA ACAGCCTGCT GGAGTCCGAG GACATCGGTG AGACCATCGC CGAATTCCGT
CGGGAGGTGC TGGGCGCGGC CATCGGCCAG CATATCCCGC CGCAGTCGCT GCCCGAGCAG
TGGGACGTCG CTGGTCTGGA GGCCGTGCTG CAGAGCGATT TCGGTGTGCA ACTGCCGCTG
CAGCAGTGGC TCGACGAAGA CGACCGGCTG CATGAGGAGG CACTGCGCGA GCGTATCCTC
GAGGCGCTGC TGGTCGCCTA TCGCGAGAAG GAGGAGATTG CCGGCACCGA GGCCTTGCGG
ACCTTCGAGA AGCAGATCTT GTTGCGCGTG CTGGACGACT TGTGGAAGGA CCACCTGTTG
ACCATGGACC ATCTGCGCCA CGGCATTCAC CTGCGCGGCT ATGCACAGAA GAATCCCAAG
CAGGAATACA AGCGCGAATC CTTCGAGCTG TTCCAGAGTC TGCTCGAGTC GATCAAGCGC
GATGCCATCC GCGTACTCTC CCACGTACAG GTCCGTCGCG AGGATCCGGC CGAGGAGGAG
GAGCGGCTGC GTCGTGAGGC AGAGGCCCTG GCCAGGCGCA TGCAATTCCA GCATGCGGCC
GCTTCGGCCC TGGCTCCTCA GGCGGAGGAG GACGACCTCG AAGTCGTGGA GGAGGTGCCT
CTGCCGGGGA CTGCGCCGGT GCGTCCGGAG CCGAAGATCG GGCGCAACGA GCCCTGTCCC
TGCGGGTCAG GCAAGAAGTA CAAGCACTGT CACGGGCAGC TCAACTAG
|
|---|
| Protein sequence | MFAPLLRVLF GSKNDREVKR MRRAVRAINA LEEQMVALTD EQLRAKTEEF RGRLGKGETL
DQLLPEAFAV AREAGKRVMG MRHFDVQLIG GMVLHEGKIA EMRTGEGKTL VATLAVYLNA
LAGKGVHVVT VNDYLARRDA NWMRPLYEFL GLSVGVVTPF QPPEEKRAAY AADITYGTNN
EFGFDYLRDN MAFSLEDKFQ RELNYAVIDE VDSILIDEAR TPLIISGQAE DSSQLYLQIN
ALIPRLKRHI EEEEGVVTQE GHYVVDEKTR QIELNEQGHQ FIEELLASAG LLPEGDNLYS
AHNLQLLTHV YAGLRAHVLF HRNVEYIVQG NQVLLIDEHT GRTMQGRRLS EGLHQAIEAK
EGLPIQAESQ TLASTTFQNY FRLYHKLAGM TGTADTEAFE FRQIYGLDVV VIPTHRPIAR
KDFNDLVYLT QEEKYAAIIG DIKECQTQGR PVLVGTASIE SSEYVSQLLK KEGIAHQVLN
AKYHEKEAEI IAQAGRPGAV TIATNMAGRG TDILLGGNWE VEVAALENPT DEPVAQIKAD
WQKRHQQVIE AGGLHVIASE RHESRRIDNQ LRGRAGRQGD PGSSRFYLSL EDNLMRIFAS
DRVKNFMKAL GMQAGEAIEH RMVTNAIEKA QRKVEGRNFD MRKQLLEFDD VANEQRKVIY
HMRNSLLESE DIGETIAEFR REVLGAAIGQ HIPPQSLPEQ WDVAGLEAVL QSDFGVQLPL
QQWLDEDDRL HEEALRERIL EALLVAYREK EEIAGTEALR TFEKQILLRV LDDLWKDHLL
TMDHLRHGIH LRGYAQKNPK QEYKRESFEL FQSLLESIKR DAIRVLSHVQ VRREDPAEEE
ERLRREAEAL ARRMQFQHAA ASALAPQAEE DDLEVVEEVP LPGTAPVRPE PKIGRNEPCP
CGSGKKYKHC HGQLN
|
|---|
| |