| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Avi_9263 |
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| Symbol | trbJ |
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| ID | 7367861 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Agrobacterium vitis S4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011984 |
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| Strand | - |
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| Start bp | 205815 |
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| End bp | 206624 |
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| Gene Length | 810 bp |
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| Protein Length | 269 aa |
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| Translation table | 11 |
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| GC content | 60% |
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| IMG OID | 643644424 |
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| Product | conjugal transfer protein TrbJ |
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| Protein accession | YP_002542721 |
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| Protein GI | 222083318 |
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| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG5314] Conjugal transfer/entry exclusion protein |
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| TIGRFAM ID | [TIGR02780] P-type conjugative transfer protein TrbJ |
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Plasmid Coverage information |
| Num covering plasmid clones | 4 |
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| Plasmid unclonability p-value | 0.127143 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGCCGATAC ACTTTTCCCG GCCGATTAAA ACGGCGCGCG CCGCTATGAT CACGGCCATC
ATGATCCCGG TCGCTCTCCC GCTTCCGGCC TATGCCGGCG GTGTGACCGG GCAGGCCACA
GAGTGGACGC AGCTCGCCAA CAATGCGGAG CTCATTAGTC TCGTCGGCAA GTCTGCCGAG
CAGGTGAACA ATCAGATCAC CCAGATCAGC CAGCTTGCAG AGCAGATCCA GAACCAGATT
AACATCTACA AGAACCTGCT GCAGAACACC GCGCAGCTGC CGAACCATAT CTGGGGTCAG
GTCGAGAACG ACCTTAACAG GCTCCAGAAC ATCGTCGCGC AGGGGCAGGG CGTCGCCTTT
TCGATGGGCA ACATCGACGA TGTTTTGAAG CAGCGTTTCC AGAGTTTTGC CGATATGAAG
AGCAATCTGC CGGACGGTCA GAGCTTCTCG TCGACCTATC AGAACTGGTC GGACACCAAT
CGCGACACGA TCGCCGGCAC GCTGAAGGCG GCAAACCTGA CGGCCGAGCA GTTTTCGAGC
GAGGAGTCGA CGATGTCGTC GCTGCGCTCG ATGTCGGAGA GCGCCGACGG CCAGATGAAG
GCCCTGCAGG TGGGGCACCA GATCGCAACG CAGCAGGTCG CGCAGATGCA GAAGCTGCGC
GGGCTCGTCT CCCAGCAGAT GACCATGATG GGAACATGGT TCCAGTCGGA ACAGGCACAG
AAGGATCTCG CCCAGGCCCG ACGCGAGAAA TTCTTCAACG CGCCCACCAA TGACATCCGC
GGTGGCCAGA CGATGGAGCC ACGCTGGTGA
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| Protein sequence | MPIHFSRPIK TARAAMITAI MIPVALPLPA YAGGVTGQAT EWTQLANNAE LISLVGKSAE
QVNNQITQIS QLAEQIQNQI NIYKNLLQNT AQLPNHIWGQ VENDLNRLQN IVAQGQGVAF
SMGNIDDVLK QRFQSFADMK SNLPDGQSFS STYQNWSDTN RDTIAGTLKA ANLTAEQFSS
EESTMSSLRS MSESADGQMK ALQVGHQIAT QQVAQMQKLR GLVSQQMTMM GTWFQSEQAQ
KDLAQARREK FFNAPTNDIR GGQTMEPRW
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