Gene Avi_9191 details

Gene Information

• Locus tag: Avi_9191
• Symbol: traF
• ID: 7367729
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Agrobacterium vitis S4
• Kingdom: Bacteria
• Replicon accession: NC_011984
• Strand: +
• Start bp: 148689
• End bp: 149219
• Gene Length: 531 bp
• Protein Length: 176 aa
• Translation table: 11
• GC content: 63%
• IMG OID: 643644374
• Product: conjugal transfer pilin processing protease TraF
• Protein accession: YP_002542671
• Protein GI: 222083268
• COG category: [O] Posttranslational modification, protein turnover, chaperones; [U] Intracellular trafficking, secretion, and vesicular transport
• COG ID: [COG4959] Type IV secretory pathway, protease TraF
• TIGRFAM ID: [TIGR02771] conjugative transfer signal peptidase TraF

Plasmid Coverage information

• Num covering plasmid clones: 5
• Plasmid unclonability p-value: 0.144533
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGAGCAAAC GCGTTGTCAT CCGGTTTCTC GGTGTCGCGG GCCTCGTCTT GAGCGGCGCC 
ACCGTCATGG GGCTCATCGG TGGTTATCGA CTGAACGTCA CGCCGAGCGA ACCCCTTGGG 
CTCTGGCGTG TGGAAAAGCT CCGACGCCCG GTTCAGGCCG GCGATCTGGT GTTTGTCTGC 
CCGCCGCAAA ACGCCTTCTT CGAGGAAGCG TGGCTACGCG GCTATCTCCG GTCCGGGCTC 
TGCCCAGGTT GGTTCGCGCC GCTCATAAAG TCCGTTCTGG CGCTTCCCGG TCAGCGCGTC 
GAAATCACTG ACCGGATTGT CGTCGACGGT CATCCCGTAT CGGCTTCCAC TGTCAGCGCG 
ACGGACAGTG AGGGCAGGGC GATCGCGCCC TTCGCCGGCG GCGTCGTGCC ACCAGGATTT 
CTAGTTCTCC ATTCTTCCTT TGCGAGTTCC TATGACTCAC GATACTTCGG CCCGATCCCG 
GACAGCGGTC TTCTCGGCCT GGCGAAACCG GTGTTCACCT TCGACCGGTG A 

 

Protein sequence

MSKRVVIRFL GVAGLVLSGA TVMGLIGGYR LNVTPSEPLG LWRVEKLRRP VQAGDLVFVC 
PPQNAFFEEA WLRGYLRSGL CPGWFAPLIK SVLALPGQRV EITDRIVVDG HPVSASTVSA 
TDSEGRAIAP FAGGVVPPGF LVLHSSFASS YDSRYFGPIP DSGLLGLAKP VFTFDR