| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Avi_9008 |
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| Symbol | |
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| ID | 7367758 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Agrobacterium vitis S4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011984 |
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| Strand | - |
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| Start bp | 7500 |
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| End bp | 8633 |
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| Gene Length | 1134 bp |
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| Protein Length | 377 aa |
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| Translation table | 11 |
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| GC content | 63% |
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| IMG OID | 643644257 |
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| Product | phage integrase family protein |
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| Protein accession | YP_002542554 |
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| Protein GI | 222083151 |
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| COG category | [L] Replication, recombination and repair |
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| COG ID | [COG4974] Site-specific recombinase XerD |
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| TIGRFAM ID | |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 8 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGCCCACA TCATCGAGCA AAACACCGAA GTTCAGGTCG AGGAGACCTC AGCGCCGTCT
CTCAGCACGG GGGCCGGCCG TGATGTTTCC GCGCCGCAAG TTTCGGCGGA AAGCCCCCTC
CCCTCCCTCG CCGGCGACGA TCATCCACCA GCCCATCTTG TCAGCCTCGC CGATCGGGCT
CGGACCTATG TCGAAGCCGC CAGTTCCGCC AACACCCGCA AAGCCTATGC CTCGGATTGG
AAGCATTTTG CCGCGTGGTG CCGACGTTCG AACCTCGTCC CCCTCCCTCC GCATCCACAA
ACGGTCGGGC TTTACATCAC AGCCTGCGCT TCCGGCACAG CTGAGCGAGG CTCTAAGGCC
AACTCCGTCT CAACTATCGA GCGGCGCCTC TCCTCGCTTT CCTGGAATTA TTCGCAGCGC
GGCCTCACAA TTGATCGCAA GGACAGGCAT ATCGCAACCG TGATGGCCGG AATTCGCAAT
AGCCATGCCC GGCCACCCCT GCAGAAGGAG GCGGTGATGG CCGAGGATAT CATCGCCATG
ATCGAGACGC TCGATCGCGG CTCACTCCGC GGCCTGCGCG ACCGCGCCAT GCTGCTGATC
GGCTATGCCG GGGGACTAAG GCGTTCAGAG ATCGTTGGTC TCGACCTCAA GCCGGACCAA
ACCGAAGATG GCCGCGGCTG GATCGAAATC CTCGACAAAG GAATGCTTGT CACCTTGCGC
GGTAAAACTG GATGGCGCGA GGTCGAGGTC GGCCGTGGCT CATCCGAGGC CACCTGTCCG
GTCGCCGCGG TCGAGACCTG GGTCAAGTTC GCCAAGCTTG CACACGGTCC CCTCTTCCGC
CGCGTGACGG GTCAGGGCAA ATCCGTCGGC GCCGAGCGTC TCAACGACAA GGAAGTGGCG
CGACTGGTGA AACGCGCGGC AATGGCCGCT GGCGTTCGCG GGGACCTCAG TGAGATCGAG
CGCGGCTTCA AGTTCTCCGG CCATTCGCTG CGGGCGGGTC TTGCCTCTTC GGCCGAAGTC
GATGAGCGTT ATGTGCAAAA GCAGTTGGGT CACGCGTCTG CAGAGATGAC CCGCAGATAT
CAGCGGCGGC GTGACCGCTT CAGGGTCAAC CTAACGAAGG CCGCGGGGCT TTAA
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| Protein sequence | MAHIIEQNTE VQVEETSAPS LSTGAGRDVS APQVSAESPL PSLAGDDHPP AHLVSLADRA
RTYVEAASSA NTRKAYASDW KHFAAWCRRS NLVPLPPHPQ TVGLYITACA SGTAERGSKA
NSVSTIERRL SSLSWNYSQR GLTIDRKDRH IATVMAGIRN SHARPPLQKE AVMAEDIIAM
IETLDRGSLR GLRDRAMLLI GYAGGLRRSE IVGLDLKPDQ TEDGRGWIEI LDKGMLVTLR
GKTGWREVEV GRGSSEATCP VAAVETWVKF AKLAHGPLFR RVTGQGKSVG AERLNDKEVA
RLVKRAAMAA GVRGDLSEIE RGFKFSGHSL RAGLASSAEV DERYVQKQLG HASAEMTRRY
QRRRDRFRVN LTKAAGL
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