Gene Avi_8226 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagAvi_8226 
SymbolvirB2 
ID7365116 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameAgrobacterium vitis S4 
KingdomBacteria 
Replicon accessionNC_011982 
Strand
Start bp168135 
End bp168500 
Gene Length366 bp 
Protein Length121 aa 
Translation table11 
GC content58% 
IMG OID643641814 
Producttype IV secretion system pilin subunit VirB2 
Protein accessionYP_002540111 
Protein GI222080247 
COG category[U] Intracellular trafficking, secretion, and vesicular transport 
COG ID[COG3838] Type IV secretory pathway, VirB2 components (pilins) 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones16 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGGCATGCT TTGAGAAATA CCCCGAGCTC TCGAAAATCC GTGACCTCAG GGACAGAGTT 
GTGAGCCTGC TGGTTCCGCA CTTGCCGAGC GTCAGTGGCG CGATCGGCTG GAGTTTGTTT
TTCCGCGAGC CAGCTGCCGC GCAGGCCGCT GGAGGCACTG ACCCGGCCAC TATGGTCAAC
AATATCTGCA CGTTTATTCT CGGTCCATTT GGTCAATCGC TCGCCGTTCT TGGTATCGTA
GCCATCGGCG TTTCGTGGAT GTTCGGCCGC GCTTCCCTTG GTCTTGTGGC AGGTGTTGTT
GGCGGAATCG TTATCATGTT TGGAGCCAGC TTTCTCGGCC AGACACTTAC CGGGGGCGGG
GGATGA
 
Protein sequence
MACFEKYPEL SKIRDLRDRV VSLLVPHLPS VSGAIGWSLF FREPAAAQAA GGTDPATMVN 
NICTFILGPF GQSLAVLGIV AIGVSWMFGR ASLGLVAGVV GGIVIMFGAS FLGQTLTGGG
G