| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Avi_8226 |
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| Symbol | virB2 |
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| ID | 7365116 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Agrobacterium vitis S4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011982 |
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| Strand | - |
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| Start bp | 168135 |
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| End bp | 168500 |
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| Gene Length | 366 bp |
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| Protein Length | 121 aa |
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| Translation table | 11 |
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| GC content | 58% |
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| IMG OID | 643641814 |
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| Product | type IV secretion system pilin subunit VirB2 |
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| Protein accession | YP_002540111 |
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| Protein GI | 222080247 |
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| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG3838] Type IV secretory pathway, VirB2 components (pilins) |
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| TIGRFAM ID | |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 16 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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| |
Sequence |
| Gene sequence | ATGGCATGCT TTGAGAAATA CCCCGAGCTC TCGAAAATCC GTGACCTCAG GGACAGAGTT
GTGAGCCTGC TGGTTCCGCA CTTGCCGAGC GTCAGTGGCG CGATCGGCTG GAGTTTGTTT
TTCCGCGAGC CAGCTGCCGC GCAGGCCGCT GGAGGCACTG ACCCGGCCAC TATGGTCAAC
AATATCTGCA CGTTTATTCT CGGTCCATTT GGTCAATCGC TCGCCGTTCT TGGTATCGTA
GCCATCGGCG TTTCGTGGAT GTTCGGCCGC GCTTCCCTTG GTCTTGTGGC AGGTGTTGTT
GGCGGAATCG TTATCATGTT TGGAGCCAGC TTTCTCGGCC AGACACTTAC CGGGGGCGGG
GGATGA
|
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| Protein sequence | MACFEKYPEL SKIRDLRDRV VSLLVPHLPS VSGAIGWSLF FREPAAAQAA GGTDPATMVN
NICTFILGPF GQSLAVLGIV AIGVSWMFGR ASLGLVAGVV GGIVIMFGAS FLGQTLTGGG
G
|
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