| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Avi_8008 |
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| Symbol | |
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| ID | 7365139 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Agrobacterium vitis S4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011982 |
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| Strand | + |
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| Start bp | 9562 |
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| End bp | 10257 |
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| Gene Length | 696 bp |
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| Protein Length | 231 aa |
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| Translation table | 11 |
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| GC content | 59% |
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| IMG OID | 643641691 |
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| Product | hypothetical protein |
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| Protein accession | YP_002539988 |
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| Protein GI | 222080125 |
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| COG category | [K] Transcription |
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| COG ID | [COG1386] Predicted transcriptional regulator containing the HTH domain |
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| TIGRFAM ID | [TIGR00281] segregation and condensation protein B |
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Plasmid Coverage information |
| Num covering plasmid clones | 13 |
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| Plasmid unclonability p-value | 0.915827 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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| |
Sequence |
| Gene sequence | ATGAGCTCAA GACAGCCACA CCGCATCGCG AAAAAGAATC AAAAGAATCC CCAGGACGAT
GTCCTGTTTG ATCGGGAGCT GAAGGATTTG CCAACGGAAT TGCGCTGGCG AGAATGGATG
ATGGAGGTCG AGGCCGTGAT TTTTGCCTCC GCCGAGCCAG TTCCCCGCGA AACCTTGGCA
CGCGTGGTGG GAAAAGACTG CAGCATCGAT TTGCTGATCG ATGATTCGAG CGAGGAACTG
CGAGATCGGC CTTACGAACT GGTGTCAGTG GCCGGTGGCT GGCAACACCG AACCCGTTCG
CGGTTCGCCG GCGCGATCCG GGCCTCAACG GCTCCGACGC GGGGAGGGGC GGCGGCACTC
TCCGAGTTTG AGGCGATGGT GCTGATGGCG GTGGGATATT TCCAGCCGGT CACCCGTACC
GAGCTGTCGA AGATCTTTGG CAAGGAGGTG AGCCGTGACG TGATCGCTGC ACTTCGCGGC
GCAGGTTTCT TGGCGTCCGG ACCACGCAGC CCTACTCCCG GAGCACCTTA TACCTATGTG
ACGACCAAGC ATTTCTTCTC CGCCTTCGGG TTGGAAACGC TCCGCGATCT CCCGGATATC
GAAGCGCTTG AAGATGCCGG GTTGTTCAGC CGGAAGGGTG AACTTCAGAT TATGGACAGC
GCACATGGGG AAGAGGGTGA GATGGAAGAT GGCTAG
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| Protein sequence | MSSRQPHRIA KKNQKNPQDD VLFDRELKDL PTELRWREWM MEVEAVIFAS AEPVPRETLA
RVVGKDCSID LLIDDSSEEL RDRPYELVSV AGGWQHRTRS RFAGAIRAST APTRGGAAAL
SEFEAMVLMA VGYFQPVTRT ELSKIFGKEV SRDVIAALRG AGFLASGPRS PTPGAPYTYV
TTKHFFSAFG LETLRDLPDI EALEDAGLFS RKGELQIMDS AHGEEGEMED G
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