| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Avi_8000 |
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| Symbol | repA |
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| ID | 7365286 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Agrobacterium vitis S4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011982 |
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| Strand | + |
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| Start bp | 136 |
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| End bp | 1251 |
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| Gene Length | 1116 bp |
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| Protein Length | 371 aa |
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| Translation table | 11 |
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| GC content | 53% |
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| IMG OID | 643641684 |
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| Product | replication protein A |
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| Protein accession | YP_002539981 |
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| Protein GI | 222080118 |
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| COG category | [D] Cell cycle control, cell division, chromosome partitioning |
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| COG ID | [COG1192] ATPases involved in chromosome partitioning |
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| TIGRFAM ID | [TIGR03453] plasmid partitioning protein RepA |
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Plasmid Coverage information |
| Num covering plasmid clones | 12 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGCTGCGCA GCCAACAATA TCCGCCGGAC GCCAAGAAGG GATTGCGGAA GTTTCAGTTG
GGAGAAGTCG CGGACTTCAT CGGAGTTACC CAGAGCCATA TTCGGCAGAT CCACTTGGAG
GGTAAAGGTC CGGAGGTCGA GTCGATAGGT GGCCGTCGCT ATTACACGGC TGATCAGATG
TTGGAGCTTC GAAATTATCT TGAAGCCAAT AAAAAATCCG ACAAGCGGTA TTACATTCCT
CGGCGTCGTG AAGGCGAACC GATGCAGGTC GTGTCGGTGG TAAATTTCAA GGGTGGAAGT
GGAAAGACTA CGACCGCTGC GCACCTTGCT CAATATCTCG CCCTCACCGG CCATCGCGTA
CTTGCGGTCG ATCTCGATCC ACAGGCGTCT CTAACGTCCC TGTTCGGAAT TCAGCCTGAA
CTTGACGACA CCGCATCTCT GTACGAGGCG CTTCGGTTCG ATGACGAGCA AAAATTCATC
TCTGAAGTCA TCCAGCCCAC CAACATTCCC TGCCTTGATG TGATTCCAGC AAATCTGGTC
CTGCAGGAGT ATGAGTATGA TGTTCCCCTG GCAATCTCCT CCAAAAAAGG AGAGGACGGC
CGGTTGTTCT ACATGCGGAT TTTCAACGCG CTGAAGCAGG TTGACGACAG ATACGACGTT
GTCGTTATCG ATTGCCCCCC ACAACTCGGG TACCTGACGA TCACCGCGCT TATGGCCTCG
ACTGGCATTC TTATCACTAT CCATCCCCAG ATGCTGGATA TCATGTCGAT GAGCCAATTC
CTGATGATGT TGGGAGGTAT AATGGGGCCG GTCGCAGAGG CCGGTGCGGA GATGCGTGTC
GAATGGTTCC GCTATCTCGT AACTCGCTTC GAGCCGACGG ACATCCCGCA AGCACAGATG
GTCGGGTTTA TGCAATCGAT GTTTGCCCAG CAAATGTTGC GAAATCACGT TCTCAAATCG
ACGGCCATTT CAGATGCTTC GATAAAGAAG CAAACTTTGT ACGAGGTAGA GCGAGGCGAT
TTCGTCCGTT CTACCTATGA CCGGGCGATG GAGAGCCTGA ACGCAGCCAA TGGCGAAATC
ATGGAACTAA TCCACGGCGC ATGGGGGCGG AAATGA
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| Protein sequence | MLRSQQYPPD AKKGLRKFQL GEVADFIGVT QSHIRQIHLE GKGPEVESIG GRRYYTADQM
LELRNYLEAN KKSDKRYYIP RRREGEPMQV VSVVNFKGGS GKTTTAAHLA QYLALTGHRV
LAVDLDPQAS LTSLFGIQPE LDDTASLYEA LRFDDEQKFI SEVIQPTNIP CLDVIPANLV
LQEYEYDVPL AISSKKGEDG RLFYMRIFNA LKQVDDRYDV VVIDCPPQLG YLTITALMAS
TGILITIHPQ MLDIMSMSQF LMMLGGIMGP VAEAGAEMRV EWFRYLVTRF EPTDIPQAQM
VGFMQSMFAQ QMLRNHVLKS TAISDASIKK QTLYEVERGD FVRSTYDRAM ESLNAANGEI
MELIHGAWGR K
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