Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Avi_7688 |
Symbol | |
ID | 7380322 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Agrobacterium vitis S4 |
Kingdom | Bacteria |
Replicon accession | NC_011981 |
Strand | - |
Start bp | 619051 |
End bp | 620067 |
Gene Length | 1017 bp |
Protein Length | 338 aa |
Translation table | 11 |
GC content | 59% |
IMG OID | 643641674 |
Product | transcriptional regulatory protein |
Protein accession | YP_002539971 |
Protein GI | 222102932 |
COG category | [K] Transcription |
COG ID | [COG2207] AraC-type DNA-binding domain-containing proteins |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 7 |
Plasmid unclonability p-value | 0.636938 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGACGCAGG CGAGAACGCC CTCCGGCTTT GCCTTGGCTA TTGTTTTAGC CTATCAAAAG CGCGGGATGA CAGAGCAGCC AGCGCTTCTC GCGGCAGGCA TTGATCCCGC CACCCTGCAT GCAGATGGCA GAATAACAGC CGATCAACTC GAACGCCTGT CAGATCACGC CATGCGCGAG CTGGACGATG AGGCGCTTGG CTGGTTTTCC CACCGCCTGC CGTGGGGCAG TTATGGCATG CTGTGCCGCG CATCACTGCC CTCGGCCACG CTGGGCATTG CCATCACGCG ATGGTGCCGC CATCATAACC TCATCACGCA GGATGTTACG CTCAGTCTCG AAACGCGACG CAATCTGGCT GAGGTTCGGA TCGAAGAGAA AAGCGAACTT GGCGCTTTTC GGGAGTTTTG TCTGGTCAGC CTGCTGCGCA ATCTTCAGGG CGTGGCCTCG TGGCTCGGCG ACACGCGCAT TCCCTTGGTT GATGTTGCGT TTCCATTCGA CGCACCAGCG CATGCTGAAA GCTACCGCTA TCTCTTCAAT GGCCCTGCGT CGTTTGGCGC GGATCAGGCA AGCCTTCGTT TTGATGCTGC CTATCTGGGC CTGCCCGTCC TGCGCGATGA TGCTGCCTTG CGACAAATGC TGAGGCGGCC CTTGCCGCTG ATGGTGCGTC AGTATCGGCG CGACCGTCTG CTCTCGCGCG AAATTCTCCG CTTGCTGAAT GACATGCCAG CAGCAGGGAT CGATGACCTG GCAGAAAAGC TCAATCTGTC AACCCGCAGC CTTCACCGCC ATATCAAACA GGAAGGCACA TCGTTTCAGG CGCTGAAAGA TCTGTCGCGC CAACGGCTGG CAGAGCGACT GCTGGCTTCC ACCCAGTGGC CGATCAAGCG CATTGCCCGC GAATGTGGCT TTGATGCAGA GGCAAGTTTT GTGCGTGCAT TCAAGTCCTG GACTGGCCAG ACCCCACGGG CTTTCGCGGT TGCTGCAAGG CAGGGTACAT CATCGCATAA GTCGTGA
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Protein sequence | MTQARTPSGF ALAIVLAYQK RGMTEQPALL AAGIDPATLH ADGRITADQL ERLSDHAMRE LDDEALGWFS HRLPWGSYGM LCRASLPSAT LGIAITRWCR HHNLITQDVT LSLETRRNLA EVRIEEKSEL GAFREFCLVS LLRNLQGVAS WLGDTRIPLV DVAFPFDAPA HAESYRYLFN GPASFGADQA SLRFDAAYLG LPVLRDDAAL RQMLRRPLPL MVRQYRRDRL LSREILRLLN DMPAAGIDDL AEKLNLSTRS LHRHIKQEGT SFQALKDLSR QRLAERLLAS TQWPIKRIAR ECGFDAEASF VRAFKSWTGQ TPRAFAVAAR QGTSSHKS
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