| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Avi_7600 |
|---|
| Symbol | pepQ |
|---|
| ID | 7380255 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Agrobacterium vitis S4 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011981 |
|---|
| Strand | - |
|---|
| Start bp | 542316 |
|---|
| End bp | 543740 |
|---|
| Gene Length | 1425 bp |
|---|
| Protein Length | 474 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 58% |
|---|
| IMG OID | 643641607 |
|---|
| Product | proline dipeptidase |
|---|
| Protein accession | YP_002539904 |
|---|
| Protein GI | 222102865 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG0006] Xaa-Pro aminopeptidase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 7 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGACCATAC ATGCCAACAC GTCAGGCACC TATCGCATCG GATCACTGCT TGCCGATTTC
CAGCCGGATT TCGATTTTGC GGCGCCTTTG CCTTTGCCCG TCGAAGAGTT CGAGGATCGT
CTGCGGCGCA TTCGCCGCCA GGCTGTTGAA GCTGGCCATG ATGCGCTTGT CGTCCATACT
GGCGGCGTTG GCTGGTTCCA CACCTCCAAT CACTATCTTC GCTATATCTG CGACTGGATG
CGCGAGGGCG TGCTGATTAT CCCGACGGAT GTCGATAGGC CTATGGTGCT ATTATCCTTC
TTCACCCAAT CCGTGCTTCT ACCGCCGGGC GGCGAACCAG TGCTGGTGGA AGATATCTGG
CAGATTGGTC CGATCGGCCG CGAATATGCC GATCGTCCAG GCGACTCGGT AATCAAGACG
GCTGAGAAAT GCGCCGAACT ATTGACAGGC ATCGGCTTGG CGAGAGGGCA GGTGGGCCGC
ATTGGTGATC GCACTTCGCT GACCTTCTGG GCCGCACTGG ACGAGTTGAT GCCCAAAGCC
AAGTTCGTCG CTGACAATGC CATTCTCGAC CGGATGCAGA AAATACGCTC GCCGCGCGAA
ATCGAGATGT TCCGAGCCGC GGCCCAGCTT GTCAGCATCG CCACGCAGGC GGCCTATCAT
GTGACTAAGC CTGATGTCAC CGACCATGAA ATCTACGCTG CCTTCACGCA AGGACAGCTT
TCCTTCGGCG GCGAAACGGG TGATGGCTAC CAGATCGGCA TCAACGAGTT CGGCACCCAT
TGCGGCAAGC CCTATGGCCA TGTCGTTCGT CTCGGTGATC TCATCAATCT CTATGTCTCC
AACATCACCT ATCGCGGCTA CACGGCCCAG ACTGCCCGTA TGATTGCCGT TGGCGACATC
ACCAAGCGGC AGGAAGAGGT GCTGGCGGCG TGCACAGATG GTGTGAAGCG GGCGGAAAAG
CTGATCCGCC CGGGCGCACT GATGCGCGAT GTCAACAATG CAGCCTTCGA GCCGATGATC
GAGCGCGGCA TGCTGTCTTC GCCGGAAGCG CGCACCATGC CTTACAACTG GGCGCCGATG
GAGGATGGCA GTGCGCGGCT GATCCCGCGC CAGTATGTCA AGAACATCGA TTGGGAGGCG
CAGGGCCGCA CCCTGATGCA TGTCTACCCG GCAACCCATG GCCCGCATAA CCCTAATCTC
GGTCATTCCG TTGGCATGGC CGGCGGGCAG AACAGCTTCA ACATCTCCTC GCATAATTAC
GACCGGATGG AAGAGGGCAT GGTATTCGTG CTGCATACGC AGTGGCTTGA GCCAATGTCT
GCTGGCTGCA ATGTCGGTGA CATGTATGTT GTCACCAAGG ATGGGTTCGA GAACCTCTCC
CGCCACACTC CGCTTGAAAC GCACCGCATT GCTGCCGAGG CCTGA
|
|---|
| Protein sequence | MTIHANTSGT YRIGSLLADF QPDFDFAAPL PLPVEEFEDR LRRIRRQAVE AGHDALVVHT
GGVGWFHTSN HYLRYICDWM REGVLIIPTD VDRPMVLLSF FTQSVLLPPG GEPVLVEDIW
QIGPIGREYA DRPGDSVIKT AEKCAELLTG IGLARGQVGR IGDRTSLTFW AALDELMPKA
KFVADNAILD RMQKIRSPRE IEMFRAAAQL VSIATQAAYH VTKPDVTDHE IYAAFTQGQL
SFGGETGDGY QIGINEFGTH CGKPYGHVVR LGDLINLYVS NITYRGYTAQ TARMIAVGDI
TKRQEEVLAA CTDGVKRAEK LIRPGALMRD VNNAAFEPMI ERGMLSSPEA RTMPYNWAPM
EDGSARLIPR QYVKNIDWEA QGRTLMHVYP ATHGPHNPNL GHSVGMAGGQ NSFNISSHNY
DRMEEGMVFV LHTQWLEPMS AGCNVGDMYV VTKDGFENLS RHTPLETHRI AAEA
|
|---|
| |