Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Avi_7557 |
Symbol | vgrG |
ID | 7380090 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Agrobacterium vitis S4 |
Kingdom | Bacteria |
Replicon accession | NC_011981 |
Strand | + |
Start bp | 503466 |
End bp | 505427 |
Gene Length | 1962 bp |
Protein Length | 653 aa |
Translation table | 11 |
GC content | 55% |
IMG OID | 643641572 |
Product | vgrG protein |
Protein accession | YP_002539869 |
Protein GI | 222102830 |
COG category | [S] Function unknown |
COG ID | [COG3501] Uncharacterized protein conserved in bacteria |
TIGRFAM ID | [TIGR01646] Rhs element Vgr protein [TIGR03361] type VI secretion system Vgr family protein |
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Plasmid Coverage information |
Num covering plasmid clones | 7 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGGACGACG TTCTGTCACC GACCGATTTC ATTCAGGCAA GCCGTGTGCT GAAACTGTTG TCGCCCTTGG GTGAAGACCA GCTTTTGCCG GAGCGGATGA CGGTGGATGA GGGCGTCAAT CGTCTGTTCG AGATCACTGT GTCGGTGCGC GCCAAGCGCG AGGCAGTGAA GCCGGAAGAA CTGATCGGCA AGCTGGTCGA TGTGTCCCTG GAAATCCGCC AGGGCGAACT GGATGGGGAT GGCGTGCGCC GACCGTTCAA TGGACTGGTG ACAAACCTTT TCGAAGGCCC GCCAGTGACG CGTGGATTGC GGTCCTATAC CCTGACTATC CGTCCGCAAC TGTGGCTGCT GTCGCGCCGG TCCGATTGCC GGATCTGGCA GAATATGACC TCGATGCAGG TGATGGAAAC GCTGTTTTCC GAGCATGGCA TTCCAGCTGC CGCATCCGCC CCTCTGCACA AAACACCGCC ATCGCGTGAG TTTTCTGTCC AGTGGAATGA AACGGACCTC GATTACCTGC TGCGCCGCTT CGAGCAGGAC GGGTTGTTCT ATTGGTTTGA ACATGAAACC GGCGTTCACC GCCTGAAGGT CAGCGACAGC AAGGTGGCCT GGAGCAAGCC ATCGGCTGCG GCAGAAGGTG TCGACAAAGT CAGATTAGCC CAGGGCTCGT CGGACCGCAA CCATATCAAC GAATGGATGC GGCAATTCTC CTATGTCCCC GGCCAGCGCG CCGGTGCGGA CTGGAATTTT GAGACGCCGA GCACTGTGCC ACTGAACGTC ACGCCATCGC TGATCCAGAT GCCGGGGGCC AAGCAGCGCG AGCTTTACGA ATATCCGGCC CGCATCTCCG ATATCAAAGA GGCCGAAGTG GCCGAGACGT TTCGAACGCA AGCAACGGAA GCCGATCATG AGCGGGTGAC GGGCCAGTCC AATGTGCGCT TTCTGGAAGC CGGTCGCCGG TTCACGCCCT ATGAGGAACC GCATCCGGAA CACAAATACG AAGAGCATGT GATTACCCGA ATTGTGCATC GGGTGGTGGA CCGATCCTAT GAGACGGCCA GCAATGAGAT GGAATATGCC AACGCATTCG AGGCCATTCC CTCACGCGTT CCACTAACGC CGCACCGAGA GACCAAACGT CCGCGTATCG AGGGGACACA GGTGGCGATT GTCGCCGGAC CGTCGGGCGA AGAAATCCAC ACCGACAAAT ACGGACGCAT CAAGCTCTGG TATCCCTGGG ATCGCAAGGC AAAAAAGGAT GGCAGTGATA CTTGCTGGGT GCGGGTTGCC CAGAACTGGG CGGGCGGCCA GTGGGGAGGA CAGATCATCC CGCGCATCGG AATGGAGGTG ATGGTTGCCT TTATCGACGG CGATCCTGAT CGACCGCTGG TGACTGGCGT CGTGCCAAAC CCCAAAAACG CTGTGCCTTA TGATCTGCCA ACGAATAAGA CGAAGAGCGT GTTTCGGACG AACACGCATA AGGGCAAAGG CTACAATGAA CTGACCTTTG AGGACGAGAA AGACCGCGAG GAGGTCTATG TCCATGCGCA AAAGGACCAG AATATCAAGG TCGAGAACAA TTATTCGAAG CGCATCAACA CTAATAAGGT GGAGAGTGTA GGCCACAACA AAGCAACTGA AGTAACAAAC AATCATTATG AAGTTGTTGG CGGCGATATG GATATTAGAG TTGGGCCTTC AAACAAATGG AGCATTACGC CGCAGCAGGC CGATACAATG GCCGCAGGCA TCGGCCAAGC CACATACGCG TTTGGAGAAA AGGGCCAATC GCCGATCGGT GAGGGCAATC TCCATATTGT CGTTCAAAAA AACAAAAGTC AAAAAATTGG CGATACGCAC ACCGAAGATG TTGGTCGTCT GAAAATAATA GATGTGGGTG ATGAATACAG TTTAAGGGCA GTTAATAACG TAGTGATTGA AGCAGGAAAA AACTTGTCTT GA
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Protein sequence | MDDVLSPTDF IQASRVLKLL SPLGEDQLLP ERMTVDEGVN RLFEITVSVR AKREAVKPEE LIGKLVDVSL EIRQGELDGD GVRRPFNGLV TNLFEGPPVT RGLRSYTLTI RPQLWLLSRR SDCRIWQNMT SMQVMETLFS EHGIPAAASA PLHKTPPSRE FSVQWNETDL DYLLRRFEQD GLFYWFEHET GVHRLKVSDS KVAWSKPSAA AEGVDKVRLA QGSSDRNHIN EWMRQFSYVP GQRAGADWNF ETPSTVPLNV TPSLIQMPGA KQRELYEYPA RISDIKEAEV AETFRTQATE ADHERVTGQS NVRFLEAGRR FTPYEEPHPE HKYEEHVITR IVHRVVDRSY ETASNEMEYA NAFEAIPSRV PLTPHRETKR PRIEGTQVAI VAGPSGEEIH TDKYGRIKLW YPWDRKAKKD GSDTCWVRVA QNWAGGQWGG QIIPRIGMEV MVAFIDGDPD RPLVTGVVPN PKNAVPYDLP TNKTKSVFRT NTHKGKGYNE LTFEDEKDRE EVYVHAQKDQ NIKVENNYSK RINTNKVESV GHNKATEVTN NHYEVVGGDM DIRVGPSNKW SITPQQADTM AAGIGQATYA FGEKGQSPIG EGNLHIVVQK NKSQKIGDTH TEDVGRLKII DVGDEYSLRA VNNVVIEAGK NLS
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