| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Avi_7529 |
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| Symbol | dppA |
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| ID | 7380069 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Agrobacterium vitis S4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011981 |
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| Strand | + |
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| Start bp | 474294 |
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| End bp | 475919 |
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| Gene Length | 1626 bp |
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| Protein Length | 541 aa |
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| Translation table | 11 |
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| GC content | 54% |
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| IMG OID | 643641551 |
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| Product | ABC transporter substrate binding protein (dipeptide) |
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| Protein accession | YP_002539848 |
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| Protein GI | 222102809 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG0747] ABC-type dipeptide transport system, periplasmic component |
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| TIGRFAM ID | |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 4 |
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| Plasmid unclonability p-value | 0.31279 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGCTAATA TATTGAAAAA TTGCGAAAAT ATCGCATCCA GATCTGTGCG CGCTATTACC
GTTACACTCG CTTTGCTTGG GGCAAGTGCA GCAATTTACG GCACCAGCAT CCAATCCGCC
GTCGCTGAAG AGCAACCCGT CAAGGGTGGC GAAATGACCA TTATCAATGG TTCGGACATC
AAAAGCTGGG ACCCGGCCAT TATTGGCGGC ACCTATCCGG GTGGCCCCAT GGATATGCTG
GACGCCATCT ATGGCTTTCT GGTCTATGTG GACGTGGATG GCAAGGTGCA GGGTGGCATG
GCCAAGAGCC TGACCAGCGC GGATGCCAAG GTGTGGACAC TGACATTGCG CGACGGTGTG
AAGTTTACCG ATGGTGGCTC TTACGATGCC GAGGCGGTAA AATTCAACTG GGAGCGTCAG
GCCATGCCCG ACACTCTTTC ACCTTCGCAA GGCTTTGTCG CCTCGTGGAT TGGTGGTGTG
AAGATTGTTG ATCCTTTGAC ACTTGAGATC ACACTGCCGA AGCCGGATCG CAATTTTGGC
TCATCGCTGG CACAGCTCGC CCCCTTCATT GCCTCGCCGC AAGCGCTGAA AGCCGCCAAG
ACCAAAACCG ATATCAAACC GGTTGGGGCC GGTGCCTTTG TGCTGGATAG CTGGAACCAG
GGCGTTTCGA TGAGCATGAA GCGCAACCCG CAATACTGGG ATCAACCGCG CCCCTATCTC
GACACGTTGA AATTTGCCAT CATCCCCGAG ACCAACAGCC GCATCGCCAC CGTGGTTCAG
GGTGGAGCAA CGATGATGGC GGGTTATCCC TATCAGTTCG GATCAAACGC CAAGGCCGCA
GGCGTTACCA CTCATGAAAT TCCAATCCCC GGTCTCTATC GCGCATACTT TAACCAGAAG
AGTGGTGCCT TCACCGACCA GCGGGCGCGT GAAGCTTTCT ACGAGGCGAT CAATCCGTCT
AAGTTGATGC AGGCCTATAC ACAGGTCAGC GGTTACGACA TTCCGACCAA TTATTTCACG
AAGTCGTCGC CCTTTTATGA TCCGACCTAT AAACTCCCAA CCTACAATCC CAAACACGCT
CAGGAATTGT TCGACCAGCT CGCCAAGGAT GGCAAGCCAT TCAACATCAA GCTTGTGACC
TATTCCAACT CGGATTTGAA ACGTCTGGCC TCCTACCTGC AACAGGCTTT GAGTGCCTAT
GATAACGTTA CGGTCAATCT TCAGCTGGTT GATCAGGCCA TGCTCAGCCC GACCTGTAAG
GGGCAGATGA ATTTCGATTT CTGCGTCGAT GGCGGCGTGC TGGTGGCCAA TGGTGCAGAG
CCGATCATTT CCAATCTTCT CAACTCAAAC GGCAACGACA ATTGGGGCAA ATACAATAGC
ATCGATATGG ATAAAGAGCT GGCAGAAGCC AACGCCACCA TGGACGCGGC TGCGGTAAAG
GCGGCCTATG CCAAGGTGCA AAAGCGCGTT GCCACAGACC TTCCGCTTTA CATTTTCGGT
GCCGAGACTC GCTTCCTGCT GCTGCGCGAT ACCACAGGCG GCATCGTGCC CTCCAACGGC
GGCATTTTGC AGAAACAATA CCTCTACGTC TGCAAGGACG CCTGCGCGTC AAAAACCGCG
AAGTAA
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| Protein sequence | MANILKNCEN IASRSVRAIT VTLALLGASA AIYGTSIQSA VAEEQPVKGG EMTIINGSDI
KSWDPAIIGG TYPGGPMDML DAIYGFLVYV DVDGKVQGGM AKSLTSADAK VWTLTLRDGV
KFTDGGSYDA EAVKFNWERQ AMPDTLSPSQ GFVASWIGGV KIVDPLTLEI TLPKPDRNFG
SSLAQLAPFI ASPQALKAAK TKTDIKPVGA GAFVLDSWNQ GVSMSMKRNP QYWDQPRPYL
DTLKFAIIPE TNSRIATVVQ GGATMMAGYP YQFGSNAKAA GVTTHEIPIP GLYRAYFNQK
SGAFTDQRAR EAFYEAINPS KLMQAYTQVS GYDIPTNYFT KSSPFYDPTY KLPTYNPKHA
QELFDQLAKD GKPFNIKLVT YSNSDLKRLA SYLQQALSAY DNVTVNLQLV DQAMLSPTCK
GQMNFDFCVD GGVLVANGAE PIISNLLNSN GNDNWGKYNS IDMDKELAEA NATMDAAAVK
AAYAKVQKRV ATDLPLYIFG AETRFLLLRD TTGGIVPSNG GILQKQYLYV CKDACASKTA
K
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