| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Avi_7428 |
|---|
| Symbol | |
|---|
| ID | 7380458 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Agrobacterium vitis S4 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011981 |
|---|
| Strand | + |
|---|
| Start bp | 398827 |
|---|
| End bp | 399360 |
|---|
| Gene Length | 534 bp |
|---|
| Protein Length | 177 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 53% |
|---|
| IMG OID | 643641486 |
|---|
| Product | ring-cleavage extradiol dioxygenase |
|---|
| Protein accession | YP_002539783 |
|---|
| Protein GI | 222102744 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG0346] Lactoylglutathione lyase and related lyases |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 4 |
|---|
| Plasmid unclonability p-value | 0.0442338 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGCAACAGG TTTCCATCAG CCATGTCGGG CTTTTCGTTC ACGATCTCGC GCTCATGCGT
GAATATTACA TCAATGTGCT CGGGTTTATC GTCACAGATG AAGTGCCGGG CAGAATGTGC
TTCTTGAGCC GCAACATCGA GGAACATCAC CAGGTTGCGC TATTTGCTGG CCGGACAGCT
GACACCCCGC AGGTGCAGCA GCTTTCGTTC AAGTTGGACA CGCTTGAAGA AGTGCGTGAA
GTCCATCGTC GTCTTGTTGA TGCTGGCACT AAGGAGATGC GCTGCGTGAG CCACGGCATT
GCCTGGTCAA TCTATTTCCC TGATCCTGAG GGCAACCGGC TGGAATATTT CACCGACACG
GAATGGTATG TCAAACAGCC TTGCGCCGAT CCGGTCGATT TCACCCTTCC GGCCGATGAG
ATTTATCGCA TATCCGAGGC AACCAATCGT GCGCATGAAG ACTTCCAGCC GTTGCACGAA
TGGCGCGATC GTTTCAACGA AAAGCTGAAG CAGAAGATCT TGGAAACCCA GTAA
|
|---|
| Protein sequence | MQQVSISHVG LFVHDLALMR EYYINVLGFI VTDEVPGRMC FLSRNIEEHH QVALFAGRTA
DTPQVQQLSF KLDTLEEVRE VHRRLVDAGT KEMRCVSHGI AWSIYFPDPE GNRLEYFTDT
EWYVKQPCAD PVDFTLPADE IYRISEATNR AHEDFQPLHE WRDRFNEKLK QKILETQ
|
|---|
| |