Gene Avi_7397 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagAvi_7397 
Symbol 
ID7380434 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameAgrobacterium vitis S4 
KingdomBacteria 
Replicon accessionNC_011981 
Strand
Start bp371039 
End bp372187 
Gene Length1149 bp 
Protein Length382 aa 
Translation table11 
GC content58% 
IMG OID643641462 
ProductSelenocysteine lyase 
Protein accessionYP_002539759 
Protein GI222102720 
COG category[E] Amino acid transport and metabolism 
COG ID[COG0520] Selenocysteine lyase 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.354097 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGCTTCCCA GCCAAAGACA TGCGTTTTCA ATTCCCGAAG ACGTGATCTA CCTCGATGCG 
GCCTACATGT CGCCGATCCC GAACATCGCC ACTGAGGCCG GTTGCGATGG GGTTCTGGTC
AAGGCGGCTC CCTGGGACAT GACCATCAAC TCCTACTATG ACGAGGTGGA GCGCGTCAGG
GAGCTTGCCG CATCGTTCGT CGGAGCATCC ATCGACGACG TCGGCGTTAT TCCGGCAACC
AGCTATGGGA TCGCTGTTGC CGCAGCAAAT GTTCACGTTA CGCCTGGCTC CGTCATCATG
ATGATGGACA ACGAGCATAC GTCGCACCGC TATGCCTGGT ATGAATTGGC CGAGAAGAAG
GGAGCGACGG TTGTAACGGT GCCTCGTCGT CCTGACCAGG AGTGGGGTTC AGCGCTCGCA
GCCGCCATCA AGGGCTCAAC CGTTCCTGTG TCGGTCGTGG CCGGTACCAT CGTCCATTGG
TTCGAGGGCA TGAGCGTCGA TATCGAGGTC GTCGCCGATG CGGCCCATGC GGTCGGAGCT
GCCCTCGTGA TGGATGGTAC GCAATGGGTC GGCGCCGTGC CCTTCGATGT CTCCAGGATA
CGCCCTGACT TCCTATCCTT TGCAACCTAC AAGTTTTTGC TCGGCCCTTA TCGTTTGGCA
TTCCTTTATG CCGACAAGAA ATGGCAGGAA GCCGGCAAGC CGATCGAATT CCATTCGTGG
AACCGCAAGG GCGGGGAGCG GCCGGATTTC TACCTTGAAA CTATGCCAGA TTATCTTCCG
GGTGCGCGCC GGTTCGACAT GGGCGAACGG TCTGACTTCG CCGTGCTGCC GATTGCCATT
CGTTCGCTCG AGCTTCTGCA GAGCTGGGGA TCGACTGCGG TCTTCGAGCG CCTGGTGCAT
CTGAACGAAT TGATCTGGAA GGAAGCGGAA GCGCGGGGCT TTGAAGGTCC CCGGAAGGAC
CTCCGCGCAC CGCACATATC GGTTATAGAG CTCGGACAGC GTTTCCGGCC GGATTTCGCC
AGAAACCTGA AGGACAACAA GGCCTTTGTC ACCGTTCGTG GCACCAAAAT GCGGATCACT
CCACACGTCT ACAATGAAGA GCACGATATC CGCAGGCTTT TTGAACTGGT CGATAGCCTG
ACACGATAA
 
Protein sequence
MLPSQRHAFS IPEDVIYLDA AYMSPIPNIA TEAGCDGVLV KAAPWDMTIN SYYDEVERVR 
ELAASFVGAS IDDVGVIPAT SYGIAVAAAN VHVTPGSVIM MMDNEHTSHR YAWYELAEKK
GATVVTVPRR PDQEWGSALA AAIKGSTVPV SVVAGTIVHW FEGMSVDIEV VADAAHAVGA
ALVMDGTQWV GAVPFDVSRI RPDFLSFATY KFLLGPYRLA FLYADKKWQE AGKPIEFHSW
NRKGGERPDF YLETMPDYLP GARRFDMGER SDFAVLPIAI RSLELLQSWG STAVFERLVH
LNELIWKEAE ARGFEGPRKD LRAPHISVIE LGQRFRPDFA RNLKDNKAFV TVRGTKMRIT
PHVYNEEHDI RRLFELVDSL TR