| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Avi_7394 |
|---|
| Symbol | |
|---|
| ID | 7380431 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Agrobacterium vitis S4 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011981 |
|---|
| Strand | + |
|---|
| Start bp | 368464 |
|---|
| End bp | 369186 |
|---|
| Gene Length | 723 bp |
|---|
| Protein Length | 240 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 56% |
|---|
| IMG OID | 643641459 |
|---|
| Product | ABC transporter membrane spanning protein |
|---|
| Protein accession | YP_002539756 |
|---|
| Protein GI | 222102717 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG4215] ABC-type arginine transport system, permease component |
|---|
| TIGRFAM ID | [TIGR01726] amine acid ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 6 |
|---|
| Plasmid unclonability p-value | 0.330237 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGATGCAA ATATGGCCTG GTTCACTTTA CTCAGCTTTG GCGACCAAGG CTGGAGCGAC
GAGCTGCTGC AAGGCGCGTG GCTCAGCATC AAGATTTCCC TCAGTGCCTA CCTCATCGGG
TTGGTGCTTG GGCTAGTCGG CGCCATTGCC AAACTGTCGA AGAGCGTCGT GGCCAGATCT
TTTGCCGGCA CCTACACGAC AGTCATCCGG TCTGTCCCGG ATATTCTCGT TATCTTTTTG
ATCTATTACT CGGCGACCGA CGCCCTGAGC TATTTATTGA GCATGTCGGG CCTGTCGGTT
GAGTTCCAGC TGAATGGCTT TATTGCTGCC GCGATCTCGC TTGGCGTCGT CCAAGGTGGC
TACAGCACGG AAGTATTGCG CGGCGCAATC GTCGCCGTGG CTCGCGGTCA GACCGAAGCA
GCCTTTGCAG TGGGACTAAC GCGCAAACAA GCGTTCTTCC TGGTGATCAT CCCACAGATG
TTGCCGCTGG CGCTGCCGGG GCTGGGTAAT CTATGGCTCA TCGTCCTCAA GGAAAGCTCA
TTGGTAAGCC TCATCGGGTT CACAGAACTG GTGCTGGTCG GCAAGATGGC CGCCGGTGCC
ACGCGGCACT ACCTGCTTTT CTATGCGGCG GTCGGCGTGG TGTTTCTCAT TATGTCCGGC
GCGTCCACGC TTGTGTTCCA TTATCTCGAA GTGAAGACTT CTCTCACCTG GAGGCGTAAA
TAA
|
|---|
| Protein sequence | MDANMAWFTL LSFGDQGWSD ELLQGAWLSI KISLSAYLIG LVLGLVGAIA KLSKSVVARS
FAGTYTTVIR SVPDILVIFL IYYSATDALS YLLSMSGLSV EFQLNGFIAA AISLGVVQGG
YSTEVLRGAI VAVARGQTEA AFAVGLTRKQ AFFLVIIPQM LPLALPGLGN LWLIVLKESS
LVSLIGFTEL VLVGKMAAGA TRHYLLFYAA VGVVFLIMSG ASTLVFHYLE VKTSLTWRRK
|
|---|
| |