| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Avi_7387 |
|---|
| Symbol | |
|---|
| ID | 7380425 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Agrobacterium vitis S4 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011981 |
|---|
| Strand | + |
|---|
| Start bp | 360696 |
|---|
| End bp | 362777 |
|---|
| Gene Length | 2082 bp |
|---|
| Protein Length | 693 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 55% |
|---|
| IMG OID | 643641453 |
|---|
| Product | ribonucleotide-diphosphate reductase subunit alpha |
|---|
| Protein accession | YP_002539750 |
|---|
| Protein GI | 222102711 |
|---|
| COG category | [F] Nucleotide transport and metabolism |
|---|
| COG ID | [COG0209] Ribonucleotide reductase, alpha subunit |
|---|
| TIGRFAM ID | [TIGR02506] ribonucleoside-diphosphate reductase, alpha subunit |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 4 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGTTAAACC TCTACGATGA GGATGGTAAA ATCCAACTCG ATAAGGACGC TCTGGCGGCA
AAACAGTATT TCTTGCAGCA CGTCAACCAG AACACCGTCT TCTTCCATAA TCTACGGGAG
AAGCTCGATT ACCTCGTGGA CGAAGGCTAC TATGAGCAAG CGGTGTTGGA CCAGTATGCG
TTCAACTTCG TCCGCGATCT TTTCGATCAT GCCTATGTGA AGAAGTTTCG CTTTCCGACC
TTTCTCGGCG CCTTCAAATA TTACACTAGC TACACGCTGA AGACCTTCGA CGGAAAGCGC
TATCTGGAGC GCTACGAAGA CCGGATCTGC ATGGTGGCAT TGACGCTGGC GCAGGGCAAT
GAGGCTTTGG CGCGGGACAT GGTCGATGAG ATTATCTCCG GTCGCTTCCA GCCGGCGACG
CCGACCTTTC TCAATGCCGG CAAGAAGCAA CGCGGCGAAC TGGTCTCCTG CTTCCTGCTG
CGCATGGAAG ACAATATGGA AAGCATCGCC CGTGGCATCA ACTCGGCATT GCAACTTTCC
AAGCGTGGGG GTGGGGTGGC GTTATCCCTG ACCAATATCC GCGAGGCTGG TGCACCGATC
AAGCAGATCG AGAACCAGTC CTCGGGCGTC ATCCCGGTGA TGAAGTTACT GGAGGACAGT
TTTTCCTATG CCAACCAGCT CGGTGCGCGC CAGGGGGCAG GGGCTGTCTA CCTGAATGCC
CATCATCCCG ATATCATGCG CTTCCTCGAT ACCAAGCGTG AAAACGCCGA CGAGAAGATT
AGGATCAAGA CGCTGTCACT CGGTGTGGTG ATCCCCGACA TCACCTTTGA ATTGGCGAAG
AACAATGAGG ATATGTATCT GTTCTCACCC TACGACGTGG AGCGTGTCTA CGGCGTCGCT
TTTTCCGAAA TCTCAGTCAC GGAAAAATAC CGCGAGATGG TCGCCGACAG CCGCATTCGT
AAGAAGAAGA TCAAGGCGCG TGATTTCTTC CAGGTGCTCG CCGAAATCCA GTTCGAGAGC
GGCTATCCGT ACATCATGTT TGAGGACACG GTGAACCGCG CCAACCCGAT AGCCGGACGC
ATTTCGATGA GCAATCTCTG CTCGGAAATC CTACAGGTGA GCGACGTCAG CACTTATAAT
GACGACCTGT CCTACAAGAC CATGGGTAAG GACATCTCCT GCAATCTCGG GTCCTTGAAC
ATCGCAGCCG TGATGGATTC CTCGGACTTC GGCAGGACCA TTGAGACCGC GATCCGGGCG
CTGACCGCCG TGTCCGACAT GAGCCATATC TCTTCGGTTC CATCGATCGA GAAGGGAAAT
GATGACAGCC ATGCGATCGG CCTTGGCCAG ATGAACCTGC ACGGCTATCT CGCACGCGAG
CGCATCTTCT ACGGATCGGA AGAGGGCATC GATTTCACCA ACATGTATTT CTACACGGTG
ACCTATCACG CCATCCGTGC CTCGAACCGG ATTGCTGCCG AGCGCGGCAC GAGCTTCAAG
GGCTTCGAGA ACTCGAAATA TGCATCCGGC GAGTATTTCG ACAAGTATAC GCAAACCGAA
TGGCTTCCAG CGACCAGGCG CGTCGCAGAA CTATTCGAAA CGGCCGGAAT CTCAATCCCG
ACACAGGAAG ACTGGTTGGC GCTGAAAGAG GTGGTGATGG CGTCCGGCCT TTATAACCAG
AACCTTCAGG CTGTGCCACC GACGGGGTCG ATCTCCTACA TCAACCATTC GACCTCCTCG
ATCCATCCGA TCGTCTCGAA GATCGAGATC CGCAAGGAAG GCAAGATCGG CCGCGTCTAC
TATCCGGCCG CCTTCATGAG CAATGATAAC CTTGATTACT ATCAGGACGC CTATGAGATC
GGACCCGAGA AGATCATAGA CACTTATGCG GCCGCCACCC AGCATGTGGA TCAAGGTCTT
TCGCTGACGC TGTTCTTCCG TGACACCGCA ACGACCCGCG ACATCAATCG GGCACAGATC
TACGCCTGGA AGAAGGGCAT CAAGACCATC TATTACATTC GCCTTCGCCA GATGGCGCTG
GCCGGCACGC AAGTGCAGGG CTGCGTATCC TGCGCGCTGT GA
|
|---|
| Protein sequence | MLNLYDEDGK IQLDKDALAA KQYFLQHVNQ NTVFFHNLRE KLDYLVDEGY YEQAVLDQYA
FNFVRDLFDH AYVKKFRFPT FLGAFKYYTS YTLKTFDGKR YLERYEDRIC MVALTLAQGN
EALARDMVDE IISGRFQPAT PTFLNAGKKQ RGELVSCFLL RMEDNMESIA RGINSALQLS
KRGGGVALSL TNIREAGAPI KQIENQSSGV IPVMKLLEDS FSYANQLGAR QGAGAVYLNA
HHPDIMRFLD TKRENADEKI RIKTLSLGVV IPDITFELAK NNEDMYLFSP YDVERVYGVA
FSEISVTEKY REMVADSRIR KKKIKARDFF QVLAEIQFES GYPYIMFEDT VNRANPIAGR
ISMSNLCSEI LQVSDVSTYN DDLSYKTMGK DISCNLGSLN IAAVMDSSDF GRTIETAIRA
LTAVSDMSHI SSVPSIEKGN DDSHAIGLGQ MNLHGYLARE RIFYGSEEGI DFTNMYFYTV
TYHAIRASNR IAAERGTSFK GFENSKYASG EYFDKYTQTE WLPATRRVAE LFETAGISIP
TQEDWLALKE VVMASGLYNQ NLQAVPPTGS ISYINHSTSS IHPIVSKIEI RKEGKIGRVY
YPAAFMSNDN LDYYQDAYEI GPEKIIDTYA AATQHVDQGL SLTLFFRDTA TTRDINRAQI
YAWKKGIKTI YYIRLRQMAL AGTQVQGCVS CAL
|
|---|
| |