| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Avi_7375 |
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| Symbol | rdh |
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| ID | 7380415 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Agrobacterium vitis S4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011981 |
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| Strand | - |
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| Start bp | 350398 |
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| End bp | 351126 |
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| Gene Length | 729 bp |
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| Protein Length | 242 aa |
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| Translation table | 11 |
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| GC content | 58% |
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| IMG OID | 643641443 |
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| Product | ribitol 2-dehydrogenase |
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| Protein accession | YP_002539740 |
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| Protein GI | 222102701 |
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| COG category | [R] General function prediction only |
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| COG ID | [COG4221] Short-chain alcohol dehydrogenase of unknown specificity |
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| TIGRFAM ID | |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 5 |
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| Plasmid unclonability p-value | 0.144533 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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| |
Sequence |
| Gene sequence | ATGACAGATA TCATGAAAGG CAAAGTCGCC GCCATCACCG GTGCTGCATC GGGCATCGGT
CTCGCTTGCG CCAAAATTCT GCTGGCGGAA GGCGCAACGG TGGTGTTGAT CGACCGCGCC
AAGGATAAGC TGGATACGCT TTGCGCAGAG CTCGGTGAGC GCGCCAAGCC GCTGGTGGTG
GATCTTTTGA ATGGGCCAGA GGTTTCCGCC ATGCTGCCGC GCATTCTGGA GGTCGCAGGC
GGGCTTGATA TTTTCCACGC CAATGCCGGA GCCTATATTG GCGGTGCCGT GGCAGAAGGC
GACCCAGATG CGTGGGACCG GATGCTCAAC CTCAATATCA ACGCAGCCTT CCGCTCAGTT
CATGCGGTAT TGCCGCATCT GATTGCGCAA AAATCCGGCG ATATCCTGTT TACCAGCTCG
ATTGCAGGCG TGGTGCCAGT GGTGTGGGAG CCGATTTATA CGGCCTCGAA ATTTGCCGTT
CAGGCCTTTG TCCATTCCAC CCGCAGGCAG GTTTCGCAAT ATGGCGTGCG CGTGGGTGCG
GTGTTGCCCG GCCCAGTCGT CACCGCATTG CTGGATGATT GGCCAAAAGC CAAGATGGAT
GAAGCGCTGG CCAATGGCAG CCTGATGCAG CCGCAGGAAG TGGCCGAAGC CGTGCTGTTC
ATGCTGTCGC GGCCCCGCAA TGTCACCATC CGTGATCTGG TGATTGTGCC CAACAGCGTC
GATCTTTAA
|
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| Protein sequence | MTDIMKGKVA AITGAASGIG LACAKILLAE GATVVLIDRA KDKLDTLCAE LGERAKPLVV
DLLNGPEVSA MLPRILEVAG GLDIFHANAG AYIGGAVAEG DPDAWDRMLN LNINAAFRSV
HAVLPHLIAQ KSGDILFTSS IAGVVPVVWE PIYTASKFAV QAFVHSTRRQ VSQYGVRVGA
VLPGPVVTAL LDDWPKAKMD EALANGSLMQ PQEVAEAVLF MLSRPRNVTI RDLVIVPNSV
DL
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