| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Avi_7240 |
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| Symbol | nocQ |
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| ID | 7380390 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Agrobacterium vitis S4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011981 |
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| Strand | + |
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| Start bp | 201900 |
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| End bp | 202670 |
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| Gene Length | 771 bp |
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| Protein Length | 256 aa |
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| Translation table | 11 |
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| GC content | 58% |
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| IMG OID | 643641337 |
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| Product | ABC transporter membrane spanning protein (nopaline) |
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| Protein accession | YP_002539634 |
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| Protein GI | 222102595 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG4215] ABC-type arginine transport system, permease component |
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| TIGRFAM ID | [TIGR01726] amine acid ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family |
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Plasmid Coverage information |
| Num covering plasmid clones | 4 |
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| Plasmid unclonability p-value | 0.0593694 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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| |
Sequence |
| Gene sequence | ATGCGGCCAG GGCCTTGGTT GCACTGGCCG CGTGAACTGC GAGAGGGTTT CGCCCATATG
CTTGAAAAAC TGCATCTGCT CGGGTTCGCG GAAGGTGGCT GGGGTCCGGC ACTGATTGGT
GCTGCCGCTC TGACTTTGTT GTTGTCCGTT CTGGGTTTTA TGCTCGGCGC GTGTTTTGGC
AGTCTGGCGG CAGCCGGTCG CTTATCATCG GCCCGTATCC CTCGCGTGAT TGCCTCTGCC
TACGCCACCG TCTTTCGCGG CGTACCCGAT CTGCTGACCA TCTATCTGTT TTACTATGGC
GGTAGCGTTG CCCTGACGAC AGTTGCGCAT TTTTTCGGTG CCAACTCATT TGTAGGGCTG
CCCGCGTTGG CAACGGGTGT CGTGGCAATC GGCATGATTT CGGGTGCCTA TCAGGCTGAG
GTCTACCGTG GCGCTTATCT TGCCGTCGAG CGGGGGCAAT TTGATGCCGC CAAGGCGCTC
GACCTCTCCC GCAGCCAGAT GCTTTTGTTG GTTATTCTGC CACAGTTGCT GCGGCACGCA
ATTCCTGGTC TTAGCAATGT CTGGCAGCTC GTCCTGAAGG ATTCCGCTCT GATTTCGGTG
GTTGGTCTTG TGGAATTGAT GCGCCAGTCG CAGATCGGTG CTGGCTCAAC CCGCGAGCCC
TTCCTTTTTT ATCTGGCCGC CGCATGCCTC TATTTTGTGA TGGCGGGCGT AACGGGCCGT
TTCTTCCGCA GTGCTGAAGT GAGAACTTCG CGGGGGATCC TGCACTCATG A
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| Protein sequence | MRPGPWLHWP RELREGFAHM LEKLHLLGFA EGGWGPALIG AAALTLLLSV LGFMLGACFG
SLAAAGRLSS ARIPRVIASA YATVFRGVPD LLTIYLFYYG GSVALTTVAH FFGANSFVGL
PALATGVVAI GMISGAYQAE VYRGAYLAVE RGQFDAAKAL DLSRSQMLLL VILPQLLRHA
IPGLSNVWQL VLKDSALISV VGLVELMRQS QIGAGSTREP FLFYLAAACL YFVMAGVTGR
FFRSAEVRTS RGILHS
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