| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Avi_7194 |
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| Symbol | |
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| ID | 7380354 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Agrobacterium vitis S4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011981 |
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| Strand | - |
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| Start bp | 159867 |
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| End bp | 161453 |
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| Gene Length | 1587 bp |
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| Protein Length | 528 aa |
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| Translation table | 11 |
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| GC content | 56% |
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| IMG OID | 643641302 |
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| Product | ABC transporter substrate binding protein (oligopeptide) |
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| Protein accession | YP_002539599 |
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| Protein GI | 222102560 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG0747] ABC-type dipeptide transport system, periplasmic component |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 3 |
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| Plasmid unclonability p-value | 0.169026 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGATCAAAA CGCATATTGC AGGCCTCGCC GCCGCATTTC TGGGCCTATC TCTGCTGGCA
ACAACAGCGG ATGCTGCCAC CCTTCGCTGG GCGCGCGCAT CGGACGCGCT GACACTCGAC
CCGAATGCCC AAAATGATGG TGTGACTGGT GCGTTGCTGG ACCAGATCTA TGACACGCTT
GTCACCCGCG ATGCCAAGGG CGCGTTGGAG CCAAGGCTTG CGACAGAATG GAAGGTTAAG
GATGGCGCTC CGGCAACCTG GGTGTTCACC ATCCGCAAGG GCGTCAAGTT TCATGACGGC
TCCGCTCTGA CGGCAGAAGA TGTGGTGTTT TCCATCAATC GCGCCCGCTC GGACAAATCC
AAGCTGCGGC AATTGCATGC CGATGTTGTG GATGTAAAGG CAGTTGGCGA GGATAAGGTT
GAGGTGACGT TGCGTGCCCC CAACCTGATC TATCCCAACA ACCTCACAGG CACCGATATT
CTCAGCAAGA GCTGGGCAGA AAAGAACAAT GCGCTGGAGG TGCAAGATGC CGCAGCCTCC
AAAGACAATT TTGCTGTGCG CAACGCCAAT GGCAGCGGAC CCTATATTCT GAAATCCCGT
GAAGTGGGTG TTCGCACCGT ACTAGAAGCC AACCCTGCCT ATTGGGGTGA GAAAAATCAG
GGCATTACGG AAATCGTCTA CACGCCGATT GCCGACAACG CCACGCGCAT TGCCGCCTTG
CTCTCCGGCG AAGTGGATTT TGTGCAGGAT GTGCCTGTGC AGGATATTGA GCGCCTGAAG
AAAACATCCG GTGTCAAACT GCTGACCACC CCGGAAAATC GCTCGATCTT CCTCGGCTAT
CGATTGGACA AGGCCCCTCT GGCATCGTCG AATGCCAAGG ACAAGAACCC GTTGAGCGAC
CTGCGCGTGC GCGAAGCCTT TGATCTGGCC ATTGACCGCG AAGCCCTGAA AACCGTGGTG
CTGCGTGGCA ATGCCGTGCC AACCGGCATT ATTGTTCCGC CGTTTGTGCA TGGCTGGACA
CCGGCGCTGG ACACCTATTC CAAGCCAGAC ATTGCCAAAG CAAAGGCACT GCTGACAGAA
GCTGGCTACC CGGACGGCTT CACCATCACG CTGGATACGC CCAACAACCG CTATGTGAAT
GACGAGGCGA TTTCTCAAGC CGTCGTCGGC TTTCTGGGTC GCATTGGCGT GAAGGTCACG
CTGGCATCAC GGCCCTTCAC CCAGCATTCT CCGCTGCTGG CAGATCGGAA ATCTGACTTC
TTCCTCTACG GCTGGGGTGT TCCGACCTAT GATAGTGCCT ATAATTTCAA CGACCTGATC
CATTCGCGCA ACGATCACTA CGGCGCGTGG AATGCCACCT ATTTCTCGGA TGCCGCCATT
GATGCGAAAA TCGAATCTCT GGGAACAGAG GTGGATGTGG CCAAGCGCGA TAAAACCATC
TCTGAGCTTT GGACCTACGT GAAGGACCAG CATCTATATC TGCCGCTGCA CAATCAGATC
ATTGCCTGGG CTGTGCGCGA CGGTTTTGGT CTTGAAATTC CAACCAATAA CACACCTCGG
TTTAACCGCG GCACAACAGG CAGTTAA
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| Protein sequence | MIKTHIAGLA AAFLGLSLLA TTADAATLRW ARASDALTLD PNAQNDGVTG ALLDQIYDTL
VTRDAKGALE PRLATEWKVK DGAPATWVFT IRKGVKFHDG SALTAEDVVF SINRARSDKS
KLRQLHADVV DVKAVGEDKV EVTLRAPNLI YPNNLTGTDI LSKSWAEKNN ALEVQDAAAS
KDNFAVRNAN GSGPYILKSR EVGVRTVLEA NPAYWGEKNQ GITEIVYTPI ADNATRIAAL
LSGEVDFVQD VPVQDIERLK KTSGVKLLTT PENRSIFLGY RLDKAPLASS NAKDKNPLSD
LRVREAFDLA IDREALKTVV LRGNAVPTGI IVPPFVHGWT PALDTYSKPD IAKAKALLTE
AGYPDGFTIT LDTPNNRYVN DEAISQAVVG FLGRIGVKVT LASRPFTQHS PLLADRKSDF
FLYGWGVPTY DSAYNFNDLI HSRNDHYGAW NATYFSDAAI DAKIESLGTE VDVAKRDKTI
SELWTYVKDQ HLYLPLHNQI IAWAVRDGFG LEIPTNNTPR FNRGTTGS
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