| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Avi_7131 |
|---|
| Symbol | |
|---|
| ID | 7380175 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Agrobacterium vitis S4 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011981 |
|---|
| Strand | + |
|---|
| Start bp | 106364 |
|---|
| End bp | 107209 |
|---|
| Gene Length | 846 bp |
|---|
| Protein Length | 281 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 57% |
|---|
| IMG OID | 643641253 |
|---|
| Product | ABC transporter membrane spanning protein (spermidine/putrescine) |
|---|
| Protein accession | YP_002539550 |
|---|
| Protein GI | 222102511 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG1177] ABC-type spermidine/putrescine transport system, permease component II |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 13 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGCGCGAGC GTGGACAACC AAGACCTGCT TCCTTCTATC TGCTGTTGGG CATTTTCGCT
GTCTATCTGG CCTTTCTCTA TGGGCCGATG CTGTGTGTGT TCATCCTGTC CTTTCAGGGA
CCAAGCGGCG GCATGAGCTT TCCCATGGTC GGGGTTTCAA CCCATTGGTT TCAGGTGCTG
CTGGGCGGCA CGGGCGGCGA AGGGGTTGGC GATCTGCATG ATGCCTTCTT TCGTTCCATG
CGCCTCGCCG CTATTGTAGC GGTGCTGACC ATGACGATAT CGGTGGCGGC AGGCATGGCC
TATCGGCGAA AGTTCCCTGG GGCCAATCTG GTATTTTACT CTGCAATAGC GGCCATGGTG
CTGCCGGGGA TTTTTGTTGG TTTTGGCATC GCGCTGGCCT TCCATCTGCT GGGCTACAAG
ATCCAGTGGT ATTCGTCGGG TATTGGCGCG CAGCTCACCT GGTCACTGCC TTTTGGCCTG
TTAATCATGT TTATCGTGAT GGGGCGTTTC AACCGGTCCT ATGAAGAGGC CGCCACGGAT
CTTGGTGCCA CCAGCTGGCA GCGCTTCAGC CAGGTAATCT TGCCAATCAT TCTGCCAGGC
GTCGTTGGGA TCTTCATGGC CGGTTTTACC TCCTCCTATG AAGAATTGGC CCGCACGTCA
CTCAATGTCG GCTCGGGCAA TACCATGCCG ATGGAAATCA CCGGATTGCT GACGGCGGCC
ACATCACCGG TGCTGTTTGC CATTGGCACG CTGACGACCG CGGTGTCCTT CATTCTCGTC
ATCGGCATGC TGCTTCTGGC GACGACGCTG GCCAAGCGGC AACAGTCGAG ATTGCAACCG
CATTGA
|
|---|
| Protein sequence | MRERGQPRPA SFYLLLGIFA VYLAFLYGPM LCVFILSFQG PSGGMSFPMV GVSTHWFQVL
LGGTGGEGVG DLHDAFFRSM RLAAIVAVLT MTISVAAGMA YRRKFPGANL VFYSAIAAMV
LPGIFVGFGI ALAFHLLGYK IQWYSSGIGA QLTWSLPFGL LIMFIVMGRF NRSYEEAATD
LGATSWQRFS QVILPIILPG VVGIFMAGFT SSYEELARTS LNVGSGNTMP MEITGLLTAA
TSPVLFAIGT LTTAVSFILV IGMLLLATTL AKRQQSRLQP H
|
|---|
| |