| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Avi_7126 |
|---|
| Symbol | |
|---|
| ID | 7380170 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Agrobacterium vitis S4 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011981 |
|---|
| Strand | + |
|---|
| Start bp | 100680 |
|---|
| End bp | 101783 |
|---|
| Gene Length | 1104 bp |
|---|
| Protein Length | 367 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 57% |
|---|
| IMG OID | 643641248 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | YP_002539545 |
|---|
| Protein GI | 222102506 |
|---|
| COG category | [C] Energy production and conversion |
|---|
| COG ID | [COG2141] Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases |
|---|
| TIGRFAM ID | [TIGR03612] pyrimidine utilization protein A |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 9 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGACGAAGA TCGGAGTCTT CATTCCCATC GGCAGCCGCG GCTGGCTTAT TTCCACCACT
TCGCCCGCAA CCATGCCGAG TTTTGAGCTC AACAAGGCGG TGGTGCAGCA GGCAGAACAT
TACGGCCTCG ATTTTGCCCT GTCGATGATC AAGCTTCGTG GCTATAATGG CCCGAGTGAA
TATTGGGTCC ATAATCTGGA ATCCTTCACC CTGATGGCCG GCTTGGCCGC CGTTACCAAG
AAAATTCAGC TGTTTGCATC TGTGGCCATG TTGACCATGC CGCCCGCAGT GGTGGCACGC
ATGGCGGCGA CGATCGATTC GATTGCGCCG GGCCGCTTTG GCATCAATAT GGTCACCGGC
TGGCAGCCTA AAGAATACCA GCAGATGGGC CTTGAGCTGA CACCCGAGCA TTTTGCCCGC
CGCTATGACT ATGCCTCGGA ATATGTGCAG GTGATGCGCG ATTTGTGGAC CAAGGGCGTC
TCCAACTTCA AGGGCGAGTT CTTCCAGATG GACGACTGCA AGCTGTCGCC ACGTCCATCC
GCCCATATTC CAGTGGTTGG TGCGGGCCAG TCGGAACGCG GCATGCGGTT TGTGGCGGAA
TATGGCGACT ACAACTTCAT TGGCGCTGGC GGGGATATGA ACCAGACCGA TGGTGCCCGC
ACCATGGTGG CCAAGGTGGA AGCCGCGGCA AAGCAAAGCG GACGCGACAC CGGCGCCTTT
CTGCTTTTGA TGGTGATTGC CGACCGTACT GACGAGTTAG CCTTTGCAAA GTGGGAGCTT
TACAAGCAGG GTACCGACAT CGAAGCGCTG GAATGGCAGG CCAGTCAGGC CGGGCAGGAT
ACGGTGGCCA AGGAAGGCTC AACGGCCGCC GCCCTGGTGC GCCAGATCAA AAATCCGCAG
CCAACCGGCA TGCTGAAGCT GATCGGCTCC TATGAAAAAG TCGCGGCAAT GCTGGATGAA
ATTGCTTTGA GCACTCCAGG CCTGAAAGGC ATCATGCTGA CCTTTGATGA CTTCGTCATC
GGCATGGAGC AGTTTGGCCA ATATATCCAG CCCTTGATGC GTTCCCGCAA TCCCAACCTC
AAACGCAATC TGGATGCAGC GTGA
|
|---|
| Protein sequence | MTKIGVFIPI GSRGWLISTT SPATMPSFEL NKAVVQQAEH YGLDFALSMI KLRGYNGPSE
YWVHNLESFT LMAGLAAVTK KIQLFASVAM LTMPPAVVAR MAATIDSIAP GRFGINMVTG
WQPKEYQQMG LELTPEHFAR RYDYASEYVQ VMRDLWTKGV SNFKGEFFQM DDCKLSPRPS
AHIPVVGAGQ SERGMRFVAE YGDYNFIGAG GDMNQTDGAR TMVAKVEAAA KQSGRDTGAF
LLLMVIADRT DELAFAKWEL YKQGTDIEAL EWQASQAGQD TVAKEGSTAA ALVRQIKNPQ
PTGMLKLIGS YEKVAAMLDE IALSTPGLKG IMLTFDDFVI GMEQFGQYIQ PLMRSRNPNL
KRNLDAA
|
|---|
| |