| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Avi_7039 |
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| Symbol | |
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| ID | 7380234 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Agrobacterium vitis S4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011981 |
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| Strand | - |
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| Start bp | 37605 |
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| End bp | 38432 |
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| Gene Length | 828 bp |
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| Protein Length | 275 aa |
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| Translation table | 11 |
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| GC content | 58% |
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| IMG OID | 643641182 |
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| Product | short chain dehydrogenase |
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| Protein accession | YP_002539479 |
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| Protein GI | 222102440 |
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| COG category | [R] General function prediction only |
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| COG ID | [COG0300] Short-chain dehydrogenases of various substrate specificities |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 3 |
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| Plasmid unclonability p-value | 0.0246661 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGTCGAGAA AGACCTTTTT CATCACCGGC GCAAATTCCG GTTTCGGCCT GGCCATCGCT
ACAGCTGCTG CCCAGATGGG CCATCAGGTG ATCGGCACCG TCCGATCCGA GATAGCACGC
TCGGCGCTTG CCGCAGCCGT ACCCGCCATT CACCCCGTCC TTTGCGACGT CACCGCCTTC
GACCAGATTC CGGATGTCGT CCGTGATACG GAAGACAAGC ACGGGCCGGT CGATGTGCTC
ATCAACAATG CCGGTTACGG CCACGAGGGC GTCATCGAAG AATCGCCTCT CGAACAGATG
CGCAGACAGT TCGACGTGAA CGTCTTTGGC GCTGTAGCTG TCGCCAAGGC GTTTATTCCC
AGGTTCCGCG AACGCCGCCA GGGTTTCATC GTCAATGTCA CGTCGATGGG CGGCATGATC
ACCATGCCCG GTATCGGGTA TTACTGTGGC AGCAAGTTTG CGCTGCAAGG CATATCAGAA
GTGATGCGTT CAGAAATGGC GCCGTTCGGC GTGCATATGA CGACGTTATG CCCCGGCTCT
TTCCGCACAG ACTGGGCCGG ACGTTCGATG ATCCGCACGG AACGGTCGAT CGCGGATTAC
GATTCCCTTT TTGATCCGAT ACGCGAGGCC CGGCAGGCAG TCAGTGGCAA GCAGCTTGGT
GATCCAGAGA AACTCGCTGC AGCCGTCTTG ATCCTAGTCG AGACCGATAA CCCGCCACCG
CAGCTTCTTC TTGGCAGCGA CGCTCTCAAG CATGTATCGG CGAGACTCAA GCGTCTTCAA
GAAGAAATCG ATGCGTGGAC GTCCGTGACG GTATCGACGG ACGGCTGA
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| Protein sequence | MSRKTFFITG ANSGFGLAIA TAAAQMGHQV IGTVRSEIAR SALAAAVPAI HPVLCDVTAF
DQIPDVVRDT EDKHGPVDVL INNAGYGHEG VIEESPLEQM RRQFDVNVFG AVAVAKAFIP
RFRERRQGFI VNVTSMGGMI TMPGIGYYCG SKFALQGISE VMRSEMAPFG VHMTTLCPGS
FRTDWAGRSM IRTERSIADY DSLFDPIREA RQAVSGKQLG DPEKLAAAVL ILVETDNPPP
QLLLGSDALK HVSARLKRLQ EEIDAWTSVT VSTDG
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