Gene Avi_7001 details

Gene Information

• Locus tag: Avi_7001
• Symbol: repB
• ID: 7380204
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Agrobacterium vitis S4
• Kingdom: Bacteria
• Replicon accession: NC_011981
• Strand: +
• Start bp: 1293
• End bp: 2306
• Gene Length: 1014 bp
• Protein Length: 337 aa
• Translation table: 11
• GC content: 55%
• IMG OID: 643641156
• Product: replication protein B
• Protein accession: YP_002539453
• Protein GI: 222102414
• COG category: [K] Transcription
• COG ID: [COG1475] Predicted transcriptional regulators
• TIGRFAM ID: [TIGR00180] ParB-like partition proteins; [TIGR03454] plasmid partitioning protein RepB

Plasmid Coverage information

• Num covering plasmid clones: 8
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGAGCCGGA AGCACATCCT TGGCGTCTCG ACGGATGCCC AAGACGCAAA GCCCTCTGAC 
AACCGGGCAG GTAAAACGCG GTCAATGCCT CTTCTTGGGG TCGCCAGAAA GGAACGCGAC 
CCGGCAACAA AGCTGACTGC GAATATCGGA AACGCACTGC GTGAGCAGAA TGACCGGTTG 
AGTCGCGCTG AAGAGATAGA GCGGCGTCTT GCTGAAGGCC ACGCGGTTAT CGAATTGGAT 
GTCTCGACGG TAGATCCATC CTTCGTGCAG GACCGAATGC CTGGCGACAT CGACGGACTT 
CTCGAATCGA TTCGAGAGCA GGGCCAGCAG GTGCCAATCC TCGTGCGCCC TCACCCGGAT 
CAGCCGGGCC GATATCAGGT GGGCTTCGGT CACCGTCGGC TTCAGGCCGT TTCAGAATTA 
GGTCTTCCGG TCAAAGCGGT TGTTCGCGAT TTGACGGATG AACAATTGGT CATTGCACAG 
GGCCAGGAGA ATAATGAACG CCAGGATCTC ACCTTTATTG AGAAAGCACG TTTTGCACAT 
CGCCTGAATA AGCAATTTTC ACGCGAAATC GTTATTGCCG CGATGTCGAT CGACAAGAGT 
AACCTGTCGA AGATGCTTTT GCTGGTCGAC ACCCTCCCCC CGGAGCTGAT CGATGCAATC 
GGCCCCGCAC CAGGTGTCGG CCGACCAAGC TGGCAGCAAC TAACGGAACT TATCGAAAAG 
GCCCCCTCGC CTTCTGACGT ATCGAAATAC GCGCTATCGA ATGAAGTGCA AGCGCTGCCA 
TCTGCGGAGC GGTTCAAGGC TGTGTTGGTC AGCCTTAAGC CTCCGCGGGT CTCTCGCGGA 
CTTCCGGAGA TTATGTCGAC CCCTGATGGG GATCGATTGG CTCAGGTTTC GCAAAGCAAA 
TCCAAATTGG AAATCACGAT AGACAGAAAG GCGACGCCTG ATTTCGCCGC CTTCGTCATT 
GATCACTTGC CTGCGCTTTA TCAGGCGCAC CGAGCACAAA ACCAGAAGAA ATAA 

 

Protein sequence

MSRKHILGVS TDAQDAKPSD NRAGKTRSMP LLGVARKERD PATKLTANIG NALREQNDRL 
SRAEEIERRL AEGHAVIELD VSTVDPSFVQ DRMPGDIDGL LESIREQGQQ VPILVRPHPD 
QPGRYQVGFG HRRLQAVSEL GLPVKAVVRD LTDEQLVIAQ GQENNERQDL TFIEKARFAH 
RLNKQFSREI VIAAMSIDKS NLSKMLLLVD TLPPELIDAI GPAPGVGRPS WQQLTELIEK 
APSPSDVSKY ALSNEVQALP SAERFKAVLV SLKPPRVSRG LPEIMSTPDG DRLAQVSQSK 
SKLEITIDRK ATPDFAAFVI DHLPALYQAH RAQNQKK