| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Avi_6275 |
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| Symbol | |
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| ID | 7381315 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Agrobacterium vitis S4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011988 |
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| Strand | - |
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| Start bp | 1269443 |
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| End bp | 1270261 |
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| Gene Length | 819 bp |
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| Protein Length | 272 aa |
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| Translation table | 11 |
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| GC content | 57% |
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| IMG OID | 643649737 |
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| Product | ABC transporter membrane spanning protein (spermidine/putrescine) |
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| Protein accession | YP_002547961 |
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| Protein GI | 222107170 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG1177] ABC-type spermidine/putrescine transport system, permease component II |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 4 |
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| Plasmid unclonability p-value | 0.152867 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGTCCGGG AAAAACGCAG CCGCGAATTC TATCTGCTCG CTATATTCTT TGCGCTCTTC
GTGCTGTTTC TCTATGGGCC GCTTTCGGCG ATCCTCATCC TTTCGTTCCA GGGAGAAAAT
GGTGGCCTGA CCTTTCCGCT CAATGGTGTC TCGCTGCATT GGTTCGCCAA TCTGTTCGAA
ACCCAGGCCG TCGGCGATTT TGGCGGCGCC ATCAAACGCT CGATCACACT CGGGCTGATG
GTGATGGTGG TCACCGTGCT GGTGTCGCTG CTGGCGGGCC TGGCGTTTCG CCGCAAGTTT
CATGGCGCGA CAGTGTTGTT TTACCTGGCC GTTGCCAGCC TGGTCGTGCC GTCGATCATC
ATTTCGCTCG GCATTGGTGT GGTCTTCCAG CAATTGGGCT TCCAACCCAA TTGGTACAGT
TCAGCTTTCG GCGCGCATTT GACCTGGACC CTGCCCTTTG GTGTGTTGAT CATGTTCGCT
GTCTTCAACC GCTTTTCACC CGCCTATGAA GAGGCGGCCC GCGACCTTGG CGCATCCTCA
TGGCAAACGT TTCGCTACGT TTTGCTACCG ATGATCGCGC CCAGCCTGAT CGGCGTTGGC
CTGTTTGGCT TCTCGCTCTC CTATGACGAA TTCGCCCGAA CGCTAATGAC GTCAGGAAGC
TTCAACACCC TGCCACTGGA AATCTACGGC ATGACGACCA ATGTCACCAC ACCGGTTCTC
TATGCGCTGG GTACGGTGAC GACAGTGTTT TCCTTCCTGG TCATTGCCCT GACGATTTTC
CTCATTCGCC GGGTCAGCCG GCCTCGTGGC CATGCCTGA
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| Protein sequence | MVREKRSREF YLLAIFFALF VLFLYGPLSA ILILSFQGEN GGLTFPLNGV SLHWFANLFE
TQAVGDFGGA IKRSITLGLM VMVVTVLVSL LAGLAFRRKF HGATVLFYLA VASLVVPSII
ISLGIGVVFQ QLGFQPNWYS SAFGAHLTWT LPFGVLIMFA VFNRFSPAYE EAARDLGASS
WQTFRYVLLP MIAPSLIGVG LFGFSLSYDE FARTLMTSGS FNTLPLEIYG MTTNVTTPVL
YALGTVTTVF SFLVIALTIF LIRRVSRPRG HA
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