| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Avi_6016 |
|---|
| Symbol | |
|---|
| ID | 7380843 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Agrobacterium vitis S4 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011988 |
|---|
| Strand | + |
|---|
| Start bp | 1021131 |
|---|
| End bp | 1022282 |
|---|
| Gene Length | 1152 bp |
|---|
| Protein Length | 383 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 60% |
|---|
| IMG OID | 643649518 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | YP_002547749 |
|---|
| Protein GI | 222106958 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 12 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAGCAATG CCCAGGTGAT GACTGATTTT AAGACGCGCC GTCATGTTCT GATCGTTACC
GGGCAGCATT TCGCCGATGC GCCGCGCAAG GTCGATCTGC ATTTCATGGC ACACAGCCTG
CTGTCGCGGG GCGACAAAGT GGATTTCCTG GTCTGGCGGC TGAGCCCAAT CAGCCGGCTG
CTGAAGGACG GACGTTACGC CTTTGCCCGC ACCCATCGTC TCAACCGCTG GGAGGGTTTG
AGCGATGGGC TTCGGCAATT CATCTGGTTT CAGTTTTTCC ACCCCATGAA CCTGAAACTT
TCCTGGCTTA ACCGCCTGGC CGATCCGCTG TTTTCCCGTA TCGGGGCGTT TTTGCCGAAA
ACGGTCCGCG ACGGGCTTTC GTCCTACACC CATATCCTGG TGGAAAGCGG TCCTTCGCCG
CTGCTTGCCC CGGTGCTTCG TCAGCATGCG CCGAAGGCCC GGATCATCTA CCATGCTGCC
GACCGGCTTT CGACCATCGG CGTGCCGCCT GCCGTCTACC GGACGCTTGC CAAGACCATC
GGGCTTTACG ATAGCGTCCA TGTGCTGGCG CAGGCGCTGC TGGCGGATTT TCCCAGCGAT
GCACCGCTGC TTTACCTGCC GCATGGCATT GATAAGGCAG CTTTCGATGC CGCCAAGCAA
AACCCCTATC AGACCGGCGC TTACCAAGGC AGCAAACATG CCGTCAGCGT TGGCGACATG
CTGTTTGATG CCGATGCCAT CGATGTCATG GCCGCCGCCA ACCCGGATTG GACCTTTCAT
CTGTTCGGGG CCAAGGCATT GCCGCGCCGG GTGCTGCCCA ATATCGTCGC CCATGGCGAA
CAGGCATTCG AGCGGATCGT GCCATTCATC AAATTCGCCG ATCTCGGCAT CGCGCCTTAC
CGGGATGGGG CAAGCGCCGA TTATCTCAGC CAATCGAGCC TGAAGATGAT CCAGTATAGC
TATTGCCGCC TGCCGATTGT CGCGCCGCAT TTTGCCGCCA TGGGGCGGGG CCATGTCATG
GGCTATGACC CCGCTGATCC GGCCTCGATC CGTGCGGCGT TTTCAGCCGC GGGGGCATTT
GATCGTCAGA CGATTGCAAC GGATGGTGTT TTAAGCTGGG ACGAGACGGT CGATGTCTTG
TTTGCGGGGT GA
|
|---|
| Protein sequence | MSNAQVMTDF KTRRHVLIVT GQHFADAPRK VDLHFMAHSL LSRGDKVDFL VWRLSPISRL
LKDGRYAFAR THRLNRWEGL SDGLRQFIWF QFFHPMNLKL SWLNRLADPL FSRIGAFLPK
TVRDGLSSYT HILVESGPSP LLAPVLRQHA PKARIIYHAA DRLSTIGVPP AVYRTLAKTI
GLYDSVHVLA QALLADFPSD APLLYLPHGI DKAAFDAAKQ NPYQTGAYQG SKHAVSVGDM
LFDADAIDVM AAANPDWTFH LFGAKALPRR VLPNIVAHGE QAFERIVPFI KFADLGIAPY
RDGASADYLS QSSLKMIQYS YCRLPIVAPH FAAMGRGHVM GYDPADPASI RAAFSAAGAF
DRQTIATDGV LSWDETVDVL FAG
|
|---|
| |