| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Avi_5979 |
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| Symbol | ocd |
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| ID | 7381061 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Agrobacterium vitis S4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011988 |
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| Strand | + |
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| Start bp | 992160 |
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| End bp | 993215 |
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| Gene Length | 1056 bp |
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| Protein Length | 351 aa |
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| Translation table | 11 |
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| GC content | 60% |
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| IMG OID | 643649489 |
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| Product | ornithine cyclodeaminase |
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| Protein accession | YP_002547720 |
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| Protein GI | 222106929 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG2423] Predicted ornithine cyclodeaminase, mu-crystallin homolog |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 13 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAGTGCTA TTGCCAATCT GAATATCGTC CCCTTCGTCA GCGTCGATCA TATGATGAAA
CTGGTGCTGC GGATCGGGGT CGAGACCTTC CTGACTGAAC TCGCCGAGGT GATCGAGGAG
GACTTCCGTC GCTGGGAAGT GTTTGACAAG ACGCCGCGCA TTGCCTCGCA TTCCAGCGAT
GGGGTGATCG AGTTGATGCC GACCAGCGAC GGCACGCTCT ACGGCTTCAA ATATGTCAAC
GGCCATCCAA AGAACATGCG GCAGGGCCGC CAGACAGTGA CGGCTTTCGG CGTGTTGTCG
GATGTCGGCA ATGGCTATCC GATGCTGCTG TCGGAAATGA CCATTCTCAC GGCATTGCGG
ACGGCGGCGA CCTCGGCTGT CGCGGCCAAA TACCTCGCCC GGCCCGATGC CCGCTGCATG
GCGGTGATCG GCAATGGCGC GCAAGCCGAG TTTCAGGCGC TGGCCTTTAA GGCGATCTGT
GGCATCACGC ATCTTCGGCT CTATGATATC GATCGCAGCG CCAGCGACAA ATGCCTGCGC
AACCTTGAGG GAAGCGGATT GGCGATAACG CTGTGCCATT CCTCGCAGGA GGCGGTCGAG
GGCGCGGATA TCATCACCAC CGTCACCGCC GACAAGCAAT GCGCCACCAT TCTCACCGAC
AACATGGTCG GCCCCGGTGT TCATATCAAC GCCGTGGGTG GGGATTGCCC CGGCAAAACC
GAATTGCACC GCGATATCCT CCATCGCGCC GATATTTTCG TCGAATATCC TCCTCAGACC
CGGATCGAGG GGGAGATCCA GCAAATGGCT CCCGATCATC CCGTCACAGA ACTGTGGCAG
GTCATGACCG GCACGGCCAA GGGACGTAGC GATTCGCGCC AGATCACCTT GTTCGATTCG
GTCGGCTTTG CCATCGAGGA TTTTTCGGCC CTGCGCTATG TGCGCAGCAA GCTGGCCGCG
ACCGGGCTTT TCACCGAATT GGACCTGCTG GCCGACCCCG ATGAGCCCCG CGATCTCTAT
GGCATGGTGC TGCGCAGCAA GGCTTCTGTC GGTTGA
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| Protein sequence | MSAIANLNIV PFVSVDHMMK LVLRIGVETF LTELAEVIEE DFRRWEVFDK TPRIASHSSD
GVIELMPTSD GTLYGFKYVN GHPKNMRQGR QTVTAFGVLS DVGNGYPMLL SEMTILTALR
TAATSAVAAK YLARPDARCM AVIGNGAQAE FQALAFKAIC GITHLRLYDI DRSASDKCLR
NLEGSGLAIT LCHSSQEAVE GADIITTVTA DKQCATILTD NMVGPGVHIN AVGGDCPGKT
ELHRDILHRA DIFVEYPPQT RIEGEIQQMA PDHPVTELWQ VMTGTAKGRS DSRQITLFDS
VGFAIEDFSA LRYVRSKLAA TGLFTELDLL ADPDEPRDLY GMVLRSKASV G
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