| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Avi_5965 |
|---|
| Symbol | |
|---|
| ID | 7381049 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Agrobacterium vitis S4 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011988 |
|---|
| Strand | - |
|---|
| Start bp | 981374 |
|---|
| End bp | 982042 |
|---|
| Gene Length | 669 bp |
|---|
| Protein Length | 222 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 55% |
|---|
| IMG OID | 643649477 |
|---|
| Product | ABC transporter membrane spanning protein (amino acid) |
|---|
| Protein accession | YP_002547708 |
|---|
| Protein GI | 222106917 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG0765] ABC-type amino acid transport system, permease component |
|---|
| TIGRFAM ID | [TIGR01726] amine acid ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 5 |
|---|
| Plasmid unclonability p-value | 0.226556 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGATCTTTG ATCCGAAAGT CATTCTCGAT CATCTACCGG AAATTTTCAG CGGTGCCACC
ACCACCCTGT GGATCTGGGT GGTCGGCATG GTGCTGGGCA TTGTCGTTGG CTTTCTCGTC
GCGACAGGAC GGCGCTACGG CGGCAGGTTT CTGGATATTC CACTGGGATT GGTGGTGGAA
GTGTTACGCG GCACGCCGTT TCTAATCCAG ATTTTTCTGG TCTATTATGG CGGACCCTAT
GTTGGCCTGT CGCTCGACCC TATCCCTTGC GGGTTGATTG GTCTCACCGT CTATTCCGCC
GCCTATTACT CGGAAATTTT TCGTGCAGGT TATGGCTCTG TTCCTCATGG CCATGTGGAA
GCGGCAGAAT GTCTGGGGCT GACCCGGCTC CAAATTATCC GCCGCATTCT CTTACCGGAA
ATGGCGCTGA TTGTGCTGCC ACCTTGCGTT AATCTCGCCA TCATTCTTCT GAAAGAATCG
GCGGTGTTGT CGATCATCAC CGTTCCCGAA CTCACCGCCA CCGTCAGCGC CATTGGTTCT
GCGCAATATG CCTTTCTGGA GGCGATTTTC GTGCTGGCCG TTATTTACTG GGTCATTGTG
GAGGCCACCG CCTGGGCCGC TCGCAAGACT GAAGCCCGTT TGAGCAGATT GAGGTTTTCC
GCGCCATGA
|
|---|
| Protein sequence | MIFDPKVILD HLPEIFSGAT TTLWIWVVGM VLGIVVGFLV ATGRRYGGRF LDIPLGLVVE
VLRGTPFLIQ IFLVYYGGPY VGLSLDPIPC GLIGLTVYSA AYYSEIFRAG YGSVPHGHVE
AAECLGLTRL QIIRRILLPE MALIVLPPCV NLAIILLKES AVLSIITVPE LTATVSAIGS
AQYAFLEAIF VLAVIYWVIV EATAWAARKT EARLSRLRFS AP
|
|---|
| |