| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Avi_5948 |
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| Symbol | pssN |
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| ID | 7381034 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Agrobacterium vitis S4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011988 |
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| Strand | + |
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| Start bp | 962799 |
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| End bp | 964019 |
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| Gene Length | 1221 bp |
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| Protein Length | 406 aa |
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| Translation table | 11 |
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| GC content | 57% |
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| IMG OID | 643649462 |
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| Product | exopolysaccharide export protein |
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| Protein accession | YP_002547693 |
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| Protein GI | 222106902 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG1596] Periplasmic protein involved in polysaccharide export |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 7 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGCAGTCG CACTGTGGAA GCGCCAAGGA GTTGTGCGAG TGGAGAGTTA CCCGTTGAAA
AAGGTTGTCG CAGTTTTTGT TACTGCGGGT CTTGCAGCAT GCGATACTCT ACCGGCCTCA
GGGCCGCTTT CCTCGCAGAT CGAGAGCCAG GCAGGTAAGT CAAGGCAGGA GCTAAACAGG
CCCAATGCAT CGGTTTTCGA TGTCGTAGAT GTCGATCAGC GGACTGCTCG CACGGTTTCC
GGTTTTTCCA ATTCGATGTT CAGCCGCCGG TTCGGCATTG GCGGGCGGGC TGGTCGGGTG
GTGATCGGGA TTGGCGATCA GTTGAAGATC AGCATTTTCG AAGCGGGATC GGACGGGCTA
TTTTCAACGA GCCAGTCCAA GCAGACGACC ATTGATGTGG TGATCCAGCC GGACGGAACC
GGCACCATTC CTTATGTCGG ACAAATCGTC CTGGCCGGCA AGACCCAGGA AGAAGCACGC
AAGGCTATTC TGGCCAAACT GGTCAATAAA GCGGTTGAGC CTGATGTCCT TGTCACGGCA
GCAGGTACTG CCTCGCGTTC CGTCACGGTT TCCGGCTCCG TCGGCAAGCC GTCGAATGTG
GAGCTGACAC TGGCCGGAGA CAAGCTCACC GAGGTGATCG CACGGGCTGG CGGGGCTTCC
AGCGAACCCT ACGAATCCTA CGTAACCCTG GTACGCGGCA CCAAATCCGC CAGCGTGCTT
TTGAAGTCGC TGATCGAAAA TCCGCGTGAA AACATTTATG TCGAGCCGCG CGACCAGATC
TATGTCACCC ACGATCCGCG CACCTTCACC ATTCTGGGTG AAGTCCAGAA GAATGGCCGG
GTACCCTTCG GCGCCAATGA TCTGAACCTC CTTGAAGCCA TTGCGCTTGG CGGCGGCGGT
TCCGACAGCC AGGTGGATGC GGAAGGCTAT TTCGTGTTCC GCTACGAGGA GCCGGAAATC
GTCATGGATA TTCTGGGTGC CAAGCGGTTC CACGAATTGC AGTCCAAGGG CATGGTGGCG
AGCAAGGATG GCCGATACCC GATCGTCTAC CGGTTCAACA TGCGTTCACC CGATAGCCTG
ATTGTTGGCC AGAGTTTCCC GATCAAGAGC CGCGATGTCA TCTATGCGTC GCGTCATCCA
ACGGTCGATT TCATGAAGTT CATGCAATTG ATCGCAACCC CTGTTGGTAC GGCCTCCGGC
GTTCGCAGTT TGACGGATTG A
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| Protein sequence | MAVALWKRQG VVRVESYPLK KVVAVFVTAG LAACDTLPAS GPLSSQIESQ AGKSRQELNR
PNASVFDVVD VDQRTARTVS GFSNSMFSRR FGIGGRAGRV VIGIGDQLKI SIFEAGSDGL
FSTSQSKQTT IDVVIQPDGT GTIPYVGQIV LAGKTQEEAR KAILAKLVNK AVEPDVLVTA
AGTASRSVTV SGSVGKPSNV ELTLAGDKLT EVIARAGGAS SEPYESYVTL VRGTKSASVL
LKSLIENPRE NIYVEPRDQI YVTHDPRTFT ILGEVQKNGR VPFGANDLNL LEAIALGGGG
SDSQVDAEGY FVFRYEEPEI VMDILGAKRF HELQSKGMVA SKDGRYPIVY RFNMRSPDSL
IVGQSFPIKS RDVIYASRHP TVDFMKFMQL IATPVGTASG VRSLTD
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